NACCATAATTTGCGGTTGCGAAACGACTTACTANATCANTAGTTGCNCGG
NANTCTNCATCTTGCCATATAAGGGATCATACTTGCTGAGCTGCTCTATG
CGTGGGGCTATTTTCAGTAGCTCAGTTATTTCTACAGAATTCATTAACCA
GAAGCAGATTTCCTGGGTCCAGTGCAGCGAGTACATAAATCCGATCCTAT
TAACTATCAGCCTATTGTTTTCCGCAAAGGCTCTACTGATTCCTACAGCC
TTCAGGGATGTATGACTGGCCAGTCTGGCAGCAAATCCACATCTGAAGTA
AAGGAACTGAATCATTTGAGAGGGTGATTGGTATGGCACTGGTCTAGTGA
AAATCCATAGGGATTTCCTCTCCTGGTCTTTGCTGGTGTGTATGTGTGAG
TTCCCATCCTGGCAATATAAAAGGACCGATTTGGGGCATCACTGTGCCAT
ATCCCCAGTATCCAATGGCTGACAGAACAGAGTGGAGATGGCCACTTATA
TTTGGAATGACCTCAAGGCTTTTCTCACAAATCCTCAGATGCGGTTGTTT
CTCCCATTGCACTGGATAAGCATTAGCTTGTATCTAGCAGCACCCATGGG
AGCGCTTTACTAGATGACCTGGTGTGTGCCATGCTGACCGAGGTGGGAAT
TCATGTTGCTGGAGGGTGGAGTCACACTACACAACACCAAAGAGATTACT
CCACATTTTGAAGGTTATGTGTCATGTAGGGACCAGACCGGCACTCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTCCCCACCCCATCCCACC
CCAAACAGGGAAACTGGCCACTGTGGTTGGCTCCATGCCAGAACTAAATG
GTGAGACCTGACTGGCAAACAGTGCATGCGTTGGGACTGAACTGAGGCTT
CCTCCCTTGCTGGCTGGTTTCCATAATGCAGAGGTGCTGTGCAGGTTGTT
GGGGGAGAAATTGTCACCAACAGTCCTTCTGGACCCTGCATGCCATGCTA
TCAAAGTGCCAAGAAAGATGTGACTACAGGTACAACAGCGGCACAGATGA
TTGGGGTACGACCAACTGCTTTCCAACTAGACTTAAACCACTCTACAGGG
GAGAATTTGCTTCTGGTACTGTAAGAGACAACAAAAATTTGAGGCTGGGG
ATGTTCACAGGCCACAGTGGAAAACAGCTATCATGGTTTTATTAAAGATA
TGTGATGTGGCTGTCAAGCTGCCTTCTAAATATCTGTGCCAGTGGATCAC
TGTTGCTCTCAGAAGTTGGTCATAGAGGGAAACTTCCTTTCGTAAATGAT
GGCACAGTACAGAAACTCAAAACCTCTGGTGGAGCTCTTAAGGACAACAT
ACTGTTGCTGTGATATGGGAGCTTACTTAATGCTTGGCATTAGATAGACA
TCTAGGTCACCCCCTCTGAAGNTCTGGGTCAGAGAAGTTGTGACTTTTCA
GTCTCCAG

Query= MSMg01no544_h06.b1 MSMg01no544_h06.b1 CHROMAT_FILE:
MSMg01no544_h06.b1 PHD_FILE: MSMg01no544_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:07 2005
         (561 letters)



>mm_chr2_49489353_49490313
          Length = 961

 Score = 1023 bits (529), Expect = 0.0
 Identities = 553/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacttgctgagctgctctatgcgtggggctattttcagtagctcagttatttctacaga 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacttgctgagcggctctatgcgtggggctattttcagtagctcagttatttctacaga 260

                                                                       
Query: 61  attcattaaccagaagcagatttcctgggtccagtgcagcgagtacataaatccgatcct 120
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 attcattaactagaagcagatttcctgggtccagtgcggcgagtacataaatccgatcct 320

                                                                       
Query: 121 attaactatcagcctattgttttccgcaaaggctctactgattcctacagccttcaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaactatcagcctattgttttccgcaaaggctctactgattcctacagccttcaggga 380

                                                                       
Query: 181 tgtatgactggccagtctggcagcaaatccacatctgaagtaaaggaactgaatcatttg 240
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 381 tgtatgactggccagtctggcagcaaatccatgtctgaagtaaaggaactgaatcatttg 440

                                                                       
Query: 241 agagggtgattggtatggcactggtctagtgaaaatccatagggatttcctctcctggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagggtgattggtatggcactggtctagtgaaaatccatagggatttcctctcctggtc 500

                                                                       
Query: 301 tttgctggtgtgtatgtgtgagttcccatcctggcaatataaaaggaccgatttggggca 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tttgctggtgtgtatgtgtgagttcccatcctggcaatataaaaggactgatttggggca 560

                                                                       
Query: 361 tcactgtgccatatccccagtatccaatggctgacagaacagagtggagatggccactta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcactgtgccatatccccagtatccaatggctgacagaacagagtggagatggccactta 620

                                                                       
Query: 421 tatttggaatgacctcaaggcttttctcacaaatcctcagatgcggttgtttctcccatt 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tatttggaatgacctcaaggcttttctcacaaatcctcagatgtggttgtttctcccatt 680

                                                                       
Query: 481 gcactggataagcattagcttgtatctagcagcacccatgggagcgctttactagatgac 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 gcactggataagcattagcttgtatctagcagcacccatgggagcactttactagatgac 740

                                
Query: 541 ctggtgtgtgccatgctgacc 561
           |||||||||||||||||||||
Sbjct: 741 ctggtgtgtgccatgctgacc 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)