BAC Information

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BAC

Clone NameMSMg01-544J13
Chromosome2 (Build37)
Map Location 127,045,906 - 127,191,848
singlet/doubletdoublet
Overlap geneAscc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408
Downstream geneA530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544J13.T7 (MSMg01no544_j13.b1)MSMg01-544J13.TJ (MSMg01no544_j13.g1)
ACCAG609858AG609859
length744748
length of high quality
(start - end)		605 (52 - 656)542 (83 - 624)
definitionCHROMAT_FILE: MSMg01no544_j13.b1 PHD_FILE: MSMg01no544_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:18 2005CHROMAT_FILE: MSMg01no544_j13.g1 PHD_FILE: MSMg01no544_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,045,906 - 127,046,507)(127,191,307 - 127,191,848)
sequence
NTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTTTGTATACCAGGCTGGCCTTGAACTCACAGAGATCC
ACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAAAGTGTGTGCCACCATG
CCTAGCTTTCCTTAAGGCTCTTCTACGTGCATTTTCTTCATAAGAGTCAC
TGTGAGCTTTGCTGTTGCCATTAAAACCATAATCTGCATGTAACGGAAGC
CTCTTAGACATGCATGCTGTTTGCCACATGCCCCATTGCTTTCTATATCT
GATTTTTTTTTTTTTTTAATTTGGCTTTTGGGAAAGACTCTCTATGTAGT
CCTGGTTATCTTGGAACTTGTTCTATAGAATATGAAATATTTTGAATCAA
ATGAAAACACACAAAAATAATTTTGTCCTCCAAGACGATAGAAATGTTTC
TTTATAAAATAATCCATTGTCACAAAGGATAAGTAAGGAATTGGGACTTT
GCATTCCCTTTACATAGAAGTATCTACAGGGAGTGGACTTTGAGCCTGAC
GGTTGAATCTGTTTTGTTGTTTTTGCTTTTTGTAATTAATTGCATGTGTT
TATTTTCTGTGATGTTGCATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGATATCTCCTTAATTAAACACCCCAGACTTACTTTTATTCC
ATTTATTCCTTATTTTGATGTTTCATCATTCATCCTTTTTATAA

ATTTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACACCCCAAGCACAGA
ACAAAAGTCTACAGGAAGGCTCACAGTGGTAAACACACAGGAAAGGGATT
TTTATATCACCAGATAATCACATTTGCTGGCTCTCTAGCGCATTTCCCCC
ACGGAGCTCAAAGCTCTCTGCAAAGCCTTTCATCTCCCTGCCGCAAGTAG
GCGGCAGGCAATTGTCACCCTGCTCTCTGCGAGGTTGAATGCCAGTGATC
AGGACCTTAGTGAGGTCGAGGCCAGGATTCCAGACCATTCCACTGAGGCA
TCCACGTGCCCACTTGCCTCCCAGAGGGATGCTGAGTGAGAAAACAACCC
ATGCTTCTAGCCTTAAAGACGCTACAAAGCTTAAAAACAAAACAAAACAA
AACAAACAAAAAACCCAGCAACCAGCACTAGACCATAACCAGCCACCGCA
ACAGCCAAGGAGAACCACAGGTGCTCAGCACGGCTGAATCCTCTTCCTTT
TGTCCTCTTTCTCAGCATCAGGTCCTCCTGGGAAATGTAGAAGATGGGCT
TCCGGCTCTTTGAAAGGCATGAGGAAGATCAAGGCTGGGGATATAACTCG
GTTGGTTGGATGTTTCCCTAGCATGCTTGAAGCCCCGACTTCATTCCCCA
GCATCAGGTAAACCAGGTATGGTGGTGAGCATTGTTACTTCTCATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_j13.b1 MSMg01no544_j13.b1 CHROMAT_FILE:
MSMg01no544_j13.b1 PHD_FILE: MSMg01no544_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:18 2005
         (605 letters)



>mm_chr2_127045703_127046707
          Length = 1005

 Score = 1149 bits (594), Expect = 0.0
 Identities = 600/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctttgtataccaggctggccttgaactcacagagatccacctgcctctgcct 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttgtagaccaggctggccttgaactcacagagatccacctgcctctgcct 263

                                                                       
Query: 64  cctgagtgctgggattaaaaagtgtgtgccaccatgcctagctttccttaaggctcttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgagtgctgggattaaaaagtgtgtgccaccatgcctagctttccttaaggctcttct 323

                                                                       
Query: 124 acgtgcattttcttcataagagtcactgtgagctttgctgttgccattaaaaccataatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acgtgcattttcttcataagagtcactgtgagctttgctgttgccattaaaaccataatc 383

                                                                       
Query: 184 tgcatgtaacggaagcctcttagacatgcatgctgtttgccacatgccccattgctttct 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtatgtaacggaagcctcttagacatgcatgctgtttgccacatgccccattgctttct 443

                                                                       
Query: 244 atatctgatttttttttttttttaatttggcttttgggaaagactctctatgtagtcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatctgatttttttttttttttaatttggcttttgggaaagactctctatgtagtcctg 503

                                                                       
Query: 304 gttatcttggaacttgttctatagaatatgaaatattttgaatcaaatgaaaacacacaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttatcttggaacttgttctatagaatatgaaatattttgaatcaaatgaaaacacacaa 563

                                                                       
Query: 364 aaataattttgtcctccaagacgatagaaatgtttctttataaaataatccattgtcaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaataattttgtcctccaagacgatagaaatgtttctttataaaataatccattgtcaca 623

                                                                       
Query: 424 aaggataagtaaggaattgggactttgcattccctttacatagaagtatctacagggagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaggataagtaaggaattgggactttgcattccctttacatagaagtatctacagggagt 683

                                                                       
Query: 484 ggactttgagcctgacggttgaatctgttttgttgtttttgctttttgtaattaattgca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggactttgagcctgacggttgaatctgttttgttgtttttgctttttgtaattaattgca 743

                                                                       
Query: 544 tgtgtttattttctgtgatgttgcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgtgtttattttctgtgatgttgcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 803

             
Query: 604 tg 605
           ||
Sbjct: 804 tg 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no544_j13.g1 MSMg01no544_j13.g1 CHROMAT_FILE:
MSMg01no544_j13.g1 PHD_FILE: MSMg01no544_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
         (542 letters)



>mm_chr2_127191298_127192239
          Length = 942

 Score = 1033 bits (534), Expect = 0.0
 Identities = 540/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaccccaagcacagaacaaaagtctacaggaaggctcacagtggtaaacacacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acacaccccaagcacagaacaaaagtctacaggaaggctcacagtggtaaacacacagga 492

                                                                       
Query: 61  aagggatttttatatcaccagataatcacatttgctggctctctagcgcatttcccccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 491 aagggatttttatatcaccagataatcacatttgctggctctctagcgcatttcccccat 432

                                                                       
Query: 121 ggagctcaaagctctctgcaaagcctttcatctccctgccgcaagtaggcggcaggcaat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 431 ggagctcaaagctctctgcaaagcctttcatctccctgctgcaagtaggcggcaggcaat 372

                                                                       
Query: 181 tgtcaccctgctctctgcgaggttgaatgccagtgatcaggaccttagtgaggtcgaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtcaccctgctctctgcgaggttgaatgccagtgatcaggaccttagtgaggtcgaggc 312

                                                                       
Query: 241 caggattccagaccattccactgaggcatccacgtgcccacttgcctcccagagggatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caggattccagaccattccactgaggcatccacgtgcccacttgcctcccagagggatgc 252

                                                                       
Query: 301 tgagtgagaaaacaacccatgcttctagccttaaagacgctacaaagcttaaaaacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgagtgagaaaacaacccatgcttctagccttaaagacgctacaaagcttaaaaacaaaa 192

                                                                       
Query: 361 caaaacaaaacaaacaaaaaacccagcaaccagcactagaccataaccagccaccgcaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 caaaacaaaacaaacaaaaaacccagcaaccagcactagaccataaccagccaccgcaac 132

                                                                       
Query: 421 agccaaggagaaccacaggtgctcagcacggctgaatcctcttccttttgtcctctttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agccaaggagaaccacaggtgctcagcacggctgaatcctcttccttttgtcctctttct 72

                                                                       
Query: 481 cagcatcaggtcctcctgggaaatgtagaagatgggcttccggctctttgaaaggcatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  cagcatcaggtcctcctgggaaatgtagaagatgggcttccggctctttgaaaggcatga 12

             
Query: 541 gg 542
           ||
Sbjct: 11  gg 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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