GTTCGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGCCTAGTGTCCAGTAGTGACAGGCCAGCAATTCCCTCA
GGACGAAGCATTGAAGCCGAGTTGTCCCAGGCTTACAGAGAAGTCTAGTT
TTTGATGCTTGGGGAAAAGCAGGAATGAAGAAAAAAAATAGCTTATGCTA
CGGTGGGGATGAGCGTACAAGCATCCAATAGGGACTAGACTGGACTTGCA
AGGAGACACTCAGGCACTGCATTGTGTGTGCAACAGTGTTCAGTTTAAAT
TACTCACTCGGTATCTGGGGACAGCCCAGTTATACAAATCTGGAGCGTTG
GGATGATTTTGGTATTAAAAATATGAGCGTGGAAGTCAACATACAGGCAG
CACGGAAGAGACAAAATGTGGAAGGCGAAGAGATCTAGGCAAGAGCTTTG
TAGGCACAGACACAGTAAAACATAGACCACCGAAGCCGGGGCAGTTGATG
ATGCGGGACAGTAACCAGGAGAATGTGATGCTGTGGATGACAAGGCTACC
TACCACATTGTGAGGGACAGAGATGTTGGCTGTAGATTTTATCAGTGAGG
TTACTGCAAAGCATTCAAGAACCTCAAAGTGTCAGCTGTGTTCAGCGACT
GCTTCCTGGTGAACAATGGGGGTGAACAAAGAGAAGGCAGAAAAAGCCAA
AAGGCCCTGGGTCTGGCTCTCAGTTCTTCTGTGTGCTAATG

NNNNAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAATCCC
ATTTTTATGGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTT
GTATATATTGGATATTAGTGCCCTATCAGATTTGGGATTGGTAAAAATTC
TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGCCTTACAGAAGCTTT
GCAATTTTATGAGGTCCCATTTGTCAATCTTACAGCGCAAGCCATTGCTG
TTCTGTTTAGGATTTTTTTCCCTGTGCCTGTATTTTTGAGGCTTTTCCCT
ACTTTCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCTTT
GATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTC
TCATTCTTCTACGTGATAACTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTGGGTGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GCCCATAGCTGTGTGGATTCATTTCTGGGTCTTCAATTCTATTCCGTTGA
TCTACCTTTCTGTCATTGTACCAGTACCGTGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTAATGTCANGCATGGTGATTCCATCAGAGGTTTTTT
TATTGTTGAGAAGAGTTTTTGCTATCCTANGTTTTCN

Query= MSMg01no544_j24.b1 MSMg01no544_j24.b1 CHROMAT_FILE:
MSMg01no544_j24.b1 PHD_FILE: MSMg01no544_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:21 2005
         (671 letters)



>mm_chr2_10748192_10749264
          Length = 1073

 Score = 1195 bits (618), Expect = 0.0
 Identities = 657/670 (98%), Gaps = 4/670 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagcctagtgtccagtagtgacaggccagcaattccctcaggacgaagcattga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaattcaagcctagtgaccagtagtgacaggccagcaattccctcaggacgaagcattga 814

                                                                       
Query: 65  agccgagttgtcccaggcttacagagaagtctagtttttgatgcttggggaaaagcagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 agccgagttgtcccaggcttacagagaagtctagtttttgatgcttggggaaaagcagga 754

                                                                       
Query: 125 atgaag-aaaaaaaatagcttatgctacggtggggatgagcgtacaagcatccaataggg 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 753 atgaagaaaaaaaaatagcttatgctacggtggggatgagcgtacaagcatccaatagga 694

                                                                       
Query: 184 actagactggacttgcaaggagacactcaggcactgcattgtgtgtgcaacagtgttcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actagactggacttgcaaggagacactcaggcactgcattgtgtgtgcaacagtgttcag 634

                                                                       
Query: 244 tttaaattactcactcggtatctggggacagcccagttatacaaatctggagcgttggga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tttaaattactcactcggtatctggggacagcccagttatacaaatctggagcgttggga 574

                                                                       
Query: 304 tgattttggtattaaaaatatgagcgtggaagtcaacatacaggcagcacggaagagaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgattttggtattaaaaatatgagcgtggaagtcaacatacaggcagcacggaagagaca 514

                                                                       
Query: 364 aaatgtggaaggcgaagagatctaggcaagagctttgtaggcacagacac-agtaaaaca 422
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 513 aaatgtggaaggcgaagagatctaggcaagagctttgtaggcacagacacaagtaaaaca 454

                                                                       
Query: 423 tagaccaccgaagccggggcagttgatgatgcgggacagtaaccaggagaatgtgatgct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagaccaccgaagccggggcagttgatgatgcgggacagtaaccaggagaatgtgatgct 394

                                                                       
Query: 483 gtggatgacaaggctacctaccacattgtgagggacagagatgttggctgtagattttat 542
           |  ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 393 gcagatgacaaggctacctaccacgttgtgagggacagagatgttgggtgtagattttat 334

                                                                       
Query: 543 cagtgaggttactgcaaagcattcaagaacctcaaagtgtcagctgtgttcagcgactgc 602
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 333 cactgaggttactgcaaagcattcaagaacctcaaagtgtcagctgtgttcagcgattgc 274

                                                                       
Query: 603 ttcctggtgaac-aatgggggtgaacaaagagaaggcagaaaaagccaaaaggccctggg 661
           ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 273 ttcct-gtgaacaaatgggggtgaacacagagaaggcagaaaaagccaaaaggccctggg 215

                     
Query: 662 tctggctctc 671
           ||||||||||
Sbjct: 214 tctggctctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1073
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1063
Effective search space:   702643
Effective search space used:   702643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)