BAC Information

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BAC

Clone NameMSMg01-544O15
Chromosome2 (Build37)
Map Location 64,217,205 - 64,217,565
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667257, Fign
Downstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544O15.T7 (MSMg01no544_o15.b1)MSMg01-544O15.TJ (MSMg01no544_o15.g1)
ACCAG610101AG610102
length771750
length of high quality
(start - end)
359 (78 - 436)361 (81 - 441)
definitionCHROMAT_FILE: MSMg01no544_o15.b1 PHD_FILE: MSMg01no544_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:44 2005CHROMAT_FILE: MSMg01no544_o15.g1 PHD_FILE: MSMg01no544_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCTCACCTGTATTGCCTACCGAATGGCAGAGAAGCACCTG
AAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCG
GTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAAGAATGAATTTATGAAATT
CCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGGAACCC
TATTCCAAAGGGAATTCCCACAATATGTACCTCACTGGATAATGTGTAAT
ATTAAGCCCCAAAACCTTAAGATACCCCCAGTATATTAAGACTTCCTATT
TTCCTTAAAACACCATGGAAACCCCTAAGTAATAATGGAAGAACCTGTAA
TTTGGGGGAAAAAATTATATG
TGTAGTGAATGCAGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGAAGCCAAACACATT
TTATGACTTTGCTCAGTGCTGATTTAACTCCACAATCAAACTATCCTGAC
AAGAATGAAGAGAGTTTTGATGTTCGATATGGCATATTGTTTGTAATTAT
TTTTGTTCCTGTGCCAAAACTTTATGCATACATACTTACAAAACAAAACA
AAATAATCTACAATGTGAGGTCATCGTAATGACCTTAAGCAAATTGACAC
ACACCTAGAGTCACCAAGGAAAGGGATGCTACCTGAAGGACTGTTCAGAT
CAGAGTGGTCTATATTCATGTCTGTGAGGTATTTTCTTCATGGGTAATTG
TTGTAGGATTCAGCCTATGGTAAGCATTTCCATTCCTAACCAGATGAGTC
TGGACTGTATAATAAAGGTAGCTGAGCTGGACATAGAAAGCAGACATATA
GCAAACAGGCCACCAATATCCCTCCCCTGTCCTTGTCTCTGCGTCAGCGC
CTGTCTCCAGAAACTGGTACCCCTAAAACCCAAATCATTTTTTTTTTTCT
TCCTCAAATCGCTTTTGGGCCAGTACCACAGAAACCCAGAGTTATTCTTT
TCTTTTCCAAAATCCTATCCATTTTTATGGTAATGTATCTAGAGGCCCCC
TTGAACCTCTCTCCAAAAAAAAATTTTGGAATTTTTGTGGAAATGTGATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_o15.g1 MSMg01no544_o15.g1 CHROMAT_FILE:
MSMg01no544_o15.g1 PHD_FILE: MSMg01no544_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:44 2005
         (361 letters)



>mm_chr2_64217005_64217765
          Length = 761

 Score =  675 bits (349), Expect = 0.0
 Identities = 358/361 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgaagccaaacacattttatgactttgctcagtgctgatttaactccacaatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgaagccaaacacattttatgactttgctcagtgctgatttaactccacaatcaaa 260

                                                                       
Query: 61  ctatcctgacaagaatgaagagagttttgatgttcgatatggcatattgtttgtaattat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctatcctgacaagaatgaagagagttttgatgtttgatatggcatattgtttgtaattat 320

                                                                       
Query: 121 ttttgttcctgtgccaaaactttatgcatacatacttacaaaacaaaacaaaataatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgttcctgtgccaaaactttatgcatacatacttacaaaacaaaacaaaataatcta 380

                                                                       
Query: 181 caatgtgaggtcatcgtaatgaccttaagcaaattgacacacacctagagtcaccaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgtgaggtcatcgtaatgaccttaagcaaattgacacacacctagagtcaccaagga 440

                                                                       
Query: 241 aagggatgctacctgaaggactgttcagatcagagtggtctatattcatgtctgtgaggt 300
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggatgccacctgaagaactgttcagatcagagtggtctatattcatgtctgtgaggt 500

                                                                       
Query: 301 attttcttcatgggtaattgttgtaggattcagcctatggtaagcatttccattcctaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttcttcatgggtaattgttgtaggattcagcctatggtaagcatttccattcctaac 560

            
Query: 361 c 361
           |
Sbjct: 561 c 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)