BAC Information

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BAC

Clone NameMSMg01-545B08
Chromosome2 (Build37)
Map Location 83,761,675 - 83,762,327
singlet/doubletsinglet
Overlap geneZswim2
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik
Downstream geneLOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B08.T7 (MSMg01no545_b08.b1)MSMg01-545B08.TJ (MSMg01no545_b08.g1)
ACCAG610230AG610231
length724729
length of high quality
(start - end)
687 (38 - 724)653 (69 - 721)
definitionCHROMAT_FILE: MSMg01no545_b08.b1 PHD_FILE: MSMg01no545_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:58 2005CHROMAT_FILE: MSMg01no545_b08.g1 PHD_FILE: MSMg01no545_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATCTGAG
TCAGAGGAATCAGACGCCGAGGAAGACTCTGAAGATGAAGATGTCAGGGC
TGTTTTCTTTTGTTCAGCTTCTGGTTTCTGGGCTACGATGACCTTGGGCG
TATTTTTCAGATGTTCTCGCAGTTCATCCGTCAATCCTCCGAGACCTATG
GAAGTGAAGAAGTTGATGGCAAACCGAGTATTGCGTGGGTTGTCTCTGGG
TAACAGACCTTCAAAGAATGGCTGGAGAGTTTCATCCTTTAACCTCGCAT
TCAGTTTAGGAAGACCCATGTATTCACACAGTTCCTGGAAGAAGATCTTG
ACAAAAATTCGACTAGACGATGTCGTGGTCTCTTCACTCAGTTTTATACA
TTCGAGAACACTCCATGGAAGTGAATCTGTGTATAAAAGGTGAGCAAACA
CCTTAGCAACATTTCTCAATTTGTTTGTCTCTAAGCGATGGATGGTGTCG
TACTGTTCCTTGAATATACTTTCAAATGATTCCATGTATTCCTTTTCCAG
CATACAAAACCGCCCAGCTAACAAGCCAAAAAAATTTTCATAGGTCCTTT
GTTGGGCACAGCAATCAAGTATCATGTTGCAGAGTTCTTTTGTTTGGCTC
TCTGCAAACTCCATTTTCAGCAACTTGTGTGCACATTCTTCAAAATCTAA
ACTTGACTGAATGGCAAGATAGAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAACGGGTACTTGTTAGCCAAATCCAAATTC
AAGTTACGAGAAGTTTCCCTCAGATGAGACTGAGCATGGAGCAGAGAAGC
ACAGTCTAGAAGGAAGCAACTTAGTGGTTTCCAGAAGGACCGAAAACAGA
CAACATCCTGGCCAAGGACTTGAGCATTATTAACAATTACAGGCTAATAG
TGTTCCACCATCTTTGATAGAATCAACCCCATGGTTCCTCTTCACACCCT
TCTCTCTCACACAGGACATTTGGTCCCTAAGTGTTCCAACACTGTTTACA
ACAGTGTTTAAACTATTCATGCAATAGCTGCCAAAGACCATCATTCCTAA
AACCAACAGTCCTGAGCTAGCCCACCTCATGCTAAAAGTCTGTGCAAGTT
CTGTCCTCAAGTCAGATAACTACTTGGAACCCTCTTTGGCCAGCCATTTT
CTTTTTTTCTTTTTTTTTTTAAGATGTTATTTCTTAGAAAGTCTTTAAAC
TGATGGTACAAAACGGTTGTTTTCAAATACAAAAAAATAATTTTTAATTG
ATGAATACTTAAGACATTTTAATAAAATTGTTATAGTTTCTGACCTCATG
GGATGGTCCAATTTCCTGAAGGTCCCACCGCTTCTCATGTAATGACCTGA
TAGGATCCCTGCACTACCTGAGCAGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b08.g1 MSMg01no545_b08.g1 CHROMAT_FILE:
MSMg01no545_b08.g1 PHD_FILE: MSMg01no545_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:58 2005
         (653 letters)



>mm_chr2_83761475_83762527
          Length = 1053

 Score = 1263 bits (653), Expect = 0.0
 Identities = 653/653 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacgggtacttgttagccaaatccaaattcaagttacgagaagtttccctcagatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacgggtacttgttagccaaatccaaattcaagttacgagaagtttccctcagatgag 260

                                                                       
Query: 61  actgagcatggagcagagaagcacagtctagaaggaagcaacttagtggtttccagaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgagcatggagcagagaagcacagtctagaaggaagcaacttagtggtttccagaagg 320

                                                                       
Query: 121 accgaaaacagacaacatcctggccaaggacttgagcattattaacaattacaggctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgaaaacagacaacatcctggccaaggacttgagcattattaacaattacaggctaat 380

                                                                       
Query: 181 agtgttccaccatctttgatagaatcaaccccatggttcctcttcacacccttctctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgttccaccatctttgatagaatcaaccccatggttcctcttcacacccttctctctc 440

                                                                       
Query: 241 acacaggacatttggtccctaagtgttccaacactgtttacaacagtgtttaaactattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacaggacatttggtccctaagtgttccaacactgtttacaacagtgtttaaactattc 500

                                                                       
Query: 301 atgcaatagctgccaaagaccatcattcctaaaaccaacagtcctgagctagcccacctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcaatagctgccaaagaccatcattcctaaaaccaacagtcctgagctagcccacctc 560

                                                                       
Query: 361 atgctaaaagtctgtgcaagttctgtcctcaagtcagataactacttggaaccctctttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgctaaaagtctgtgcaagttctgtcctcaagtcagataactacttggaaccctctttg 620

                                                                       
Query: 421 gccagccattttctttttttctttttttttttaagatgttatttcttagaaagtctttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccagccattttctttttttctttttttttttaagatgttatttcttagaaagtctttaa 680

                                                                       
Query: 481 actgatggtacaaaacggttgttttcaaatacaaaaaaataatttttaattgatgaatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgatggtacaaaacggttgttttcaaatacaaaaaaataatttttaattgatgaatac 740

                                                                       
Query: 541 ttaagacattttaataaaattgttatagtttctgacctcatgggatggtccaatttcctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaagacattttaataaaattgttatagtttctgacctcatgggatggtccaatttcctg 800

                                                                
Query: 601 aaggtcccaccgcttctcatgtaatgacctgataggatccctgcactacctga 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaggtcccaccgcttctcatgtaatgacctgataggatccctgcactacctga 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)