XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGCATTTCTATTCTGAAAGTTTGAACACACTCCACGTATTAGTAAGGCAT
TTCAGAAACTCGTTTTGCACCTGCAGACACAGCAGAGACACCAGACACAG
TAGTGTGAGAGTCAGAGGGTGGTTCTGGTTCTTTGAGACAAACGCAGGAC
AAACGCCCAAAGAAAAAGTGACTTCCCACACTTTTCTTTCATTTTGTCAA
CCTAATTTGCTTCCCTACCACTTAATTTTTATTATTAATAATTTTACACA
TAAGAGGTTTTGAAAAAAAATCCATGACCATTCTTGCCCCTCCAGTCCCT
TCTCTACCTCCCCACTACGTTCCCTTCCCAACTTCATGGAATACTGCTGT
CTTTTTCTTTTAAACCTACTAAGCCCCTTTCCTGCTGCATGTACATGCAT
GGGGTAGGACCATCTCCTGGACCATGGGTAACTGTAAATCTATTTTACTT
CATGCCAAAGTAGATAAATTCTACTGTCAATACATTTCATGATCCAAAAA
CAATGATATAAATAAATGAATACAAATTCAAGAAAAATATAAGGTGATGG
GAAACAATTATATCAAGTTACAAGTCTATTACTCCTCAGTTCTGAGACAG
TCAAGGCAGGAGAAAGGGTCCATTTTGAAAGATTAACATTTATTTCCATT
TTATTTAATTGTTTATGGACTGAGAAATGGACAGATTCT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTCTCTGCCTTTTAAAAAAGTCTATACCCATGA
GAGGAGATACATAGACAAAGTTTGGAGCAGAAACTGAAGGAAAGGCCATC
CAGTGACTGTCTCACCTGGGGATCTATCCCATATACACCTCCCAAACCCA
GACACTATCGTGGATGCCAACAAGATATCAGTTGCTTACTGACTGGAGCC
TGATATAGCTGTCTCCTGAGAGGTTCTGCCAGTGCCTGACAAATACAGAA
GTGGAGGCTCACAGCCATCCATTGGACTGAGCACTGGGTCCCCAATGGAG
GATCTAGAGAAAGGTCCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGA
GGAACAACAATATCAACCAACCAGTACTCCCCAGAGCTCCCAGGGACTAA
ACCACCAACCAAAGAGTATACAAGGAGGGACTCAAGGCCTCAGCCACATA
TGTAGCAGAGGATGGTCTTGTGGGACATCAATGAGAGGAGAGGTCCTTGA
CCTTGTGAAGGCTTAATGCCCCAGTGTAGGGGAATGCCAGGACAGGGGAG
CTGGAGTGGTGGGTTAGTGAGCAGGGGGAGGGGGGATATGGATAGGGGAT
TNNNNNNNNNNNNNNTNTNTTNTTNTTTTTTTTTTNTTTTTTTTTTNTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTNGTTTTTTTG

Query= MSMg01no545_d11.b1 MSMg01no545_d11.b1 CHROMAT_FILE:
MSMg01no545_d11.b1 PHD_FILE: MSMg01no545_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:08 2005
         (698 letters)



>mm_chr2_65848710_65849806
          Length = 1097

 Score =  743 bits (384), Expect = 0.0
 Identities = 426/440 (96%), Gaps = 1/440 (0%)
 Strand = Plus / Minus

                                                                        
Query: 256  tacacataagaggttttgaaaaaaaatccatgaccattcttgcccctccagtcccttctc 315
            ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1084 tacacataagaggttctgaaaaaaaatccatgaccattcttgcccctccagccccttctc 1025

                                                                        
Query: 316  tacctccccactacgttcccttcccaacttcatggaatactgctgtctttttcttttaaa 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tacctccccactacgttcccttcccaacttcatggaatactgctgtctttttcttttaaa 965

                                                                        
Query: 376  cctactaagcccctttcctgctgcatgtacatgcatggggtaggaccatctcctggacca 435
            ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 964  cctactaagcccctttcctgctgcatgtacacgaatggggtaggaccatctcctggacta 905

                                                                        
Query: 436  tgggtaactgtaaatctattttacttcatgccaaagtagataaattctactgtcaataca 495
            ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  tgggtaaccataaatctattttacttcatgccaaagtagataaattctactgtcaataca 845

                                                                        
Query: 496  tttcatgatccaaaaacaatgatataaataaatgaatacaaattcaagaaaaatataagg 555
            | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 844  tgtcatgatccaaaaacaatgatataaataaatgaatataaattaaagaaaaatataagg 785

                                                                        
Query: 556  tgatgggaaacaattatatcaagttacaagtctattactcctcagttctgagacagtcaa 615
            |||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||
Sbjct: 784  tgatgggaaacaattatatcaa-ttacaagtcaactactactcagttctgagacagtcaa 726

                                                                        
Query: 616  ggcaggagaaagggtccattttgaaagattaacatttatttccattttatttaattgttt 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  ggcaggagaaagggtccattttgaaagattaacatttatttccattttatttaattgttt 666

                                
Query: 676  atggactgagaaatggacag 695
            ||||||||||||||||||||
Sbjct: 665  atggactgagaaatggacag 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space:   747856
Effective search space used:   747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)