BAC Information

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BAC

Clone NameMSMg01-545D17
Chromosome2 (Build37)
Map Location 99,607,319 - 99,607,626
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386
Downstream geneLOC668702, LOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545D17.T7 (MSMg01no545_d17.b1)MSMg01-545D17.TJ (MSMg01no545_d17.g1)
ACCAG610343AG610344
length740736
length of high quality
(start - end)		682 (36 - 717)560 (67 - 626)
definitionCHROMAT_FILE: MSMg01no545_d17.b1 PHD_FILE: MSMg01no545_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:09 2005CHROMAT_FILE: MSMg01no545_d17.g1 PHD_FILE: MSMg01no545_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCAG
TGTTTGTTTCTGTGTCATTCTTTTGGCTTCTGATTTCGTTAATTTGAATA
TTCCCCCTCTACCTTTACTTAATTTGAATAAGGCTTTGTCTATCTTGTTG
ACTTTTGCAAAGTAACATGTTTCAGAGATTTCTTGTGTTGATCTGTTTGT
TCCTATTTTATTGACACTAGCCATCAGGTTGATTGTTTCCTGTAATTTAT
TTCCATTAGGTATGCTTACTTCTATTTGTTCTAGAGCTTTTAGGTGTGAT
AAGTCGCTAGGTTGGATATCTCCAACTTTTTTTTTCCATTTTTTATTAGG
TATTTAGCTCATTTACATTTCCAGTGCTATACCAAAAGTCCCCCATAGCC
ACCCACTCCCACTCCCCTACCCACCCACTTCCCCTTTTTGGCCCTGGCGT
TCCCCTGTCCTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTT
CCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCAAGAGTCA
AGAGCTCCGGGGTACACAGTATCTCCAACTTTTTTTATGTAGACACTTTC
AACACTGCTTTTTGTGTGTGTGTCCCGTATGTTCGTGCATCATGTGTATT
CAATTCCATTTAGCGCCAGAACATTTTTAATTTCTTTATTTCTGTTTTGA
CCCCTATTTTATGGAACAGAGAGTTGTTCAGTTTCCACGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTTCAGATCAGAGAAGTATGACAATGAGTCCATG
ATCATGAAATTAACTAGTCTTACCATATGGAAAGGCTTTTGAAGACACAG
TGCCAATTATGGGACAATAGCCTAGAGGGCTGAGGCAGAGTTATCCAGAA
GGTAGTAAATAATTTTAATCAGTATTTAATGCGTGGTACCATTTCTCTTA
TATCCAGAATTCACAGGGTCAGAAATCAAGTAGTGGAAATAGAGTAATTC
TATACACTATAACCACTAGGAAAACAAACAAACAAACAAACAAACAACAA
AACAAAACAAAAAAAACTAGAATACATTTTGATTCCTGTTTCCATGACTT
TTATTTTTGCTATCAGAGAAGCACTGGTTTCACAAAAAGAAACGTTTATA
CCATGAGAAATAACCAACCAACATTCCACTGGAATAGAATCTCAGAACCT
ACCCCCACCCCACCCCATCCCCCACCCTATCCCACACCCCCACTCCTGCT
CACTTAGGAATGCTAATGTCTTAGGGTCAGCAAGCTCAGAAGACAGAGGT
AGACAGGATGGCATTACAGATTACCATGGAGAAATTGATGACAGTCAATA
CATACCCTGTGATCAAAGTCAATGGGAAATGACAACAACCTAATCCAGAA
AGAATGACTAAGGGTACAAACCCAACCAAAAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_d17.g1 MSMg01no545_d17.g1 CHROMAT_FILE:
MSMg01no545_d17.g1 PHD_FILE: MSMg01no545_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:09 2005
         (560 letters)



>mm_chr2_99606667_99607626
          Length = 960

 Score =  520 bits (269), Expect = e-152
 Identities = 306/329 (93%), Gaps = 23/329 (6%)
 Strand = Plus / Minus

                                                                       
Query: 234 ctatacactataaccactaggaaaacaaacaaacaaacaaacaaac--aacaaaacaaaa 291
           ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||  ||||
Sbjct: 960 ctatacactataaccactaggaaaacaaacaaacaaacaaa-aaacaaaacaaa--aaaa 904

                                                                       
Query: 292 caaaaaaaactagaatacattttgattcctgtttccatgacttttatttttgctatcaga 351
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 -aaaaaaaactagaatacattttgattcctgtttccatgacttttatttttgctatcaga 845

                                                                       
Query: 352 gaagcactggtttcacaaaaagaaacgtttataccatgagaaataaccaaccaacattcc 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaagcactggtttcacaaaaagaaacgtttataccatgagaaataaccaaccaacattcc 785

                                                                       
Query: 412 actggaatagaatctcagaacctacccccaccccaccccatcccccaccctatcccacac 471
           ||||||||||||||||||||||  |||||   ||||||||||||||||||          
Sbjct: 784 actggaatagaatctcagaacc--ccccc---ccaccccatcccccaccc---------- 740

                                                                       
Query: 472 ccccactcctgctcacttaggaatgctaatgtcttagggtcagcaagctcagaagacaga 531
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 --ccactcctgctcacttaggaatgctaatgtcttagggtcagcaagctcagaagacaga 682

                                        
Query: 532 ggtagacaggatggcattacagattacca 560
           |||||||||||||||||||||||||||||
Sbjct: 681 ggtagacaggatggcattacagattacca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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