Query= MSMg01no545_d19.b1 MSMg01no545_d19.b1 CHROMAT_FILE:
MSMg01no545_d19.b1 PHD_FILE: MSMg01no545_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:09 2005
(533 letters)
>mm_chr2_145929183_145930116
Length = 934
Score = 1017 bits (526), Expect = 0.0
Identities = 532/534 (99%), Gaps = 2/534 (0%)
Strand = Plus / Minus
Query: 1 cactctatgtacctttgatttttatgtccttctgg-aaaattaaattggaactccccttt 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 618 cactctatgtacctttgatttttatgtccttctggaaaaattaaattggaactccccttt 559
Query: 60 atcacttcttcatttcatttttccgattgcaaaaagggcaggagcttaatgtgctgcaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atcacttcttcatttcatttttccgattgcaaaaagggcaggagcttaatgtgctgcaga 499
Query: 120 ctaaagctgcaggggcagctgggcacacatgggcagatgcccgagtctctggacagctgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctaaagctgcaggggcagctgggcacacatgggcagatgcccgagtctctggacagctgg 439
Query: 180 ctgagtcctgggctccatttccaaagtgtgaggctgcgggcagtggctgcaaccagtggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgagtcctgggctccatttccaaagtgtgaggctgcgggcagtggctgcaaccagtggg 379
Query: 240 caggtgaggggggtcaggctcgcggccacaccggatttctttctcatttagcgagaagca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caggtgaggggggtcaggctcgcggccacaccggatttctttctcatttagcgagaagca 319
Query: 300 gaaggaatatttaaatggcgagaagaggtgtctctccagttctctttattctttaaccag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaaggaatatttaaatggcgagaagaggtgtctctccagttctctttattctttaaccag 259
Query: 360 aaagacatttctttcctaccctctgagaataaggtttcttctttaaaacatgaaaagctt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 258 aaagacatttctttcctaccctctgagaataaggtttcttctttaaaacatgaaaagc-t 200
Query: 420 ttttttttttttttttttttttttttttaagaaaagatcgatcgaagccactgaaagagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttttttttttttttttttttttttttttaagaaaagatcgatcgaagccactgaaagagc 140
Query: 480 agtccattcacagaagcactggcctccccagggagcttgctagacactcttata 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agtccattcacagaagcactggcctccccagggagcttgctagacactcttata 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space: 483252
Effective search space used: 483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_d19.g1 MSMg01no545_d19.g1 CHROMAT_FILE:
MSMg01no545_d19.g1 PHD_FILE: MSMg01no545_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:09 2005
(615 letters)
>mm_chr2_145775681_145776695
Length = 1015
Score = 1189 bits (615), Expect = 0.0
Identities = 615/615 (100%)
Strand = Plus / Plus
Query: 1 tttaaatttgttgtctagcaagtcctcattttaaattgctaccctctgaggccaacaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaatttgttgtctagcaagtcctcattttaaattgctaccctctgaggccaacaggt 260
Query: 61 agttcagtaatttaaagaaatggatgggggtggtcaggaaagagtcaagcctcgccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcagtaatttaaagaaatggatgggggtggtcaggaaagagtcaagcctcgccaact 320
Query: 121 tacatgttttcaaaattagatttcctcagccctctctttagaaattcgtacggtcacaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatgttttcaaaattagatttcctcagccctctctttagaaattcgtacggtcacaac 380
Query: 181 aggctgcagtagcatcctgaatgacagggtgggggaaggatgagagcatccttcgagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggctgcagtagcatcctgaatgacagggtgggggaaggatgagagcatccttcgagtca 440
Query: 241 tggtgatgcatctctgacagcctgtgcagacccccgggtagtgtgggtggggggctcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgatgcatctctgacagcctgtgcagacccccgggtagtgtgggtggggggctcagc 500
Query: 301 tttcaggtcactatgtaatgtcacaccagaccatccagatgccaggtcaaaggttaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaggtcactatgtaatgtcacaccagaccatccagatgccaggtcaaaggttaatgt 560
Query: 361 cagcagaaatctggtatgccgctcagacatcgtgcccttttattcccgaggccccccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcagaaatctggtatgccgctcagacatcgtgcccttttattcccgaggccccccacc 620
Query: 421 cgactggcaggagaggagctctttggaatggaaggaaaagtagagggaaaagaaagtagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgactggcaggagaggagctctttggaatggaaggaaaagtagagggaaaagaaagtagc 680
Query: 481 ctgggagacacgatggccttggctggcggggcgcaactgagcccatgtgattttccagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgggagacacgatggccttggctggcggggcgcaactgagcccatgtgattttccagac 740
Query: 541 accttgtttcctcatggggagggagtgtgactgctttgttactaacacggtctcaccctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accttgtttcctcatggggagggagtgtgactgctttgttactaacacggtctcaccctg 800
Query: 601 tctttcctctccagg 615
|||||||||||||||
Sbjct: 801 tctttcctctccagg 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
