Query= MSMg01no545_e01.b1 MSMg01no545_e01.b1 CHROMAT_FILE:
MSMg01no545_e01.b1 PHD_FILE: MSMg01no545_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:10 2005
(441 letters)
>mm_chr2_168410898_168411738
Length = 841
Score = 681 bits (352), Expect = 0.0
Identities = 399/428 (93%), Gaps = 22/428 (5%)
Strand = Plus / Minus
Query: 4 ggaattctctggtttcctccagaagtatcatttcacttggatgctgtgctggggacagac 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggaattctctggtcacctccagaagtatcatttcacttggatgctgtgctggggacagac 371
Query: 64 aggtggcagtgcttacaaccagtttacctcagtgggtctgacctttgtgaggtcaaacaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aggtggcagtgcttacaaccagtttacctcagtgggtctgacctttgtgaggtcaaacaa 311
Query: 124 atgccctatgagcatggcttgctgcttttcagagtctctttctgtggtccttacactgct 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 atgccctatgagcatggcttgctgcttttcagagtctctttctgtggtccttacgctgct 251
Query: 184 gggctcacactgtttgaaaagctgatgaaaaatcacagatcactgcg------------c 231
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 250 gggctcacactgtttgaaaagctgatgaaaaatcacagatcactgcgcgcgcacacacac 191
Query: 232 acacacacacacacacacacacacacacacacacgtgcgtatatatgcatgaactggctg 291
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 190 acacacacacacacacacacacacacacacacacgtacgtacatatgcatgaactggctg 131
Query: 292 tttgaacacacgtatgtcatgagcacagagtattcatacaagcata----------ctgt 341
||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 130 tttgagcacacgtatgtcatgagcacagagtattcatacaagcatacaccatccacctgt 71
Query: 342 ggcccccagggcgcagcctctccccactcctactgccttgggcttttcccaccttttttt 401
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 70 ggcccccagggcgcagcctctccccactcccactgccttgggcttttcccaccttttttt 11
Query: 402 tttttttt 409
||||||||
Sbjct: 10 tttttttt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_e01.g1 MSMg01no545_e01.g1 CHROMAT_FILE:
MSMg01no545_e01.g1 PHD_FILE: MSMg01no545_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:10 2005
(507 letters)
>mm_chr2_168224254_168225160
Length = 907
Score = 949 bits (491), Expect = 0.0
Identities = 503/507 (99%)
Strand = Plus / Plus
Query: 1 attctgagcacagtagtgacctgcctgtccttgaagaggccacctccccacactccttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgagcacagtagtgacctgcctgtccttgaagaggccacctccccacactccttct 260
Query: 61 accactcagaggcctggtcagatggcatctcctggtcctggacccttctcagggtgggct 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 accactcagaggcctggtcagatggcatctcctggtcctggtcccttctcagggtgggct 320
Query: 121 aatgataaggctccatcagtgtgcgtgcattgaggatggggcaggttcattcctatacca 180
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aatgatagggctccatcagtgtgcgtgcattgaggatgggacaggttcattcctatacca 380
Query: 181 aaacactgaaaaacaaagctaagccaatattttccttgtacgctgggcgcgtttccccca 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aaacactgaaaaacaaagctaagccaatattttccttgtacactgggcgcgtttccccca 440
Query: 241 gatttctcctggggctgagagtctccggaaacactgcctcataaatattgaatcacgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttctcctggggctgagagtctccggaaacactgcctcataaatattgaatcacgtcc 500
Query: 301 ttaccttctgcgcaggcccctggcaactgcttcctagaaatgaatttggagccgggcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaccttctgcgcaggcccctggcaactgcttcctagaaatgaatttggagccgggcagt 560
Query: 361 aattacccctggagatgttcgctcaaatccgagagcagattaaataatgaataggaatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattacccctggagatgttcgctcaaatccgagagcagattaaataatgaataggaatgt 620
Query: 421 catttgtgtgttccaatttagaatccccagctcattcttgttctggatgaaattgaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttgtgtgttccaatttagaatccccagctcattcttgttctggatgaaattgaatgt 680
Query: 481 cgagagccatgggggatcattgggtcc 507
|||||||||||||||||||||||||||
Sbjct: 681 cgagagccatgggggatcattgggtcc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
