Query= MSMg01no545_g06.b1 MSMg01no545_g06.b1 CHROMAT_FILE:
MSMg01no545_g06.b1 PHD_FILE: MSMg01no545_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:20 2005
(707 letters)
>mm_chr2_140864186_140865292
Length = 1107
Score = 1274 bits (659), Expect = 0.0
Identities = 692/703 (98%)
Strand = Plus / Minus
Query: 5 gaattcttccatccagttccatcacctatgagatctgcccaaaggacagtgctatcaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattcttccatccagttccatcacctatgagatctgcccaaaggacagtgctatcaaga 848
Query: 65 gagtgccagaacaaggtttccaaatataaatgctgtaggcttgtatgaaaaccatacaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gagtgccagaacaaggtttccaaatataaatgctgtaggcttgtatgaaaaccatacaag 788
Query: 125 acttcaaaatgccacagctatatatttaaattaccagaaatttagaggtatgaggaatct 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acttcaaaattccacagctatatatttaaattaccagaaatttagaggtatgaggaatct 728
Query: 185 gtaaaaagtacatacaatattaatggtacaacaagataaaaggcaaaaagaaaccggagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gtaaaaagtacatacaatattaatggtacaacaagataaaaggcaaaaagaaaccggagt 668
Query: 245 cctctgtagctaaagaaactatataattggagtgggggagagtaaaaataatgatattga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cctctgtagctaaagaaactatataattggagtgggggagagtaaaaataatgatattga 608
Query: 305 attttgcttccattttagacgtttaaaaatatgtgcttcatcatattctttgctcatctt 364
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtttcgcttccattttagacgtttaaaaatatgtgcttcatcatattctttgctcatctt 548
Query: 365 taaatctgtggttctcctgtccacagacactgtcatgtagaaggaaatgcatgacaagta 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taaatctgtggttctcgtgtccacagacactgtcatgtagaaggaaatgcatgacaagta 488
Query: 425 tttcaaaatttgccaaagtacagaatttagttgttttaatgggaaagcctaccccaaggt 484
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 487 tttcaaactttgccaaagtacagaatttagttgtattaatgggaaagcctaccccaaggt 428
Query: 485 tcgaaatagaccctatgccttcatgataagtccattctctataaagaaggacagattgct 544
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 427 ttgaaatagaccctatgccttcatgataagtccattgtctataaagaaggacagattgct 368
Query: 545 ttgtgatccagcttgtttctttagctccagcagagacaacttctgttttgaaagttaaat 604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttgtgatccagcttatttctttagctccagcagagacaacttctgttttgaaagttaaat 308
Query: 605 gtgtatgattactttgtagattatgactatatcagagcccaaatcagcatgcattgaaac 664
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtatgattgctttgtagattatgactatatcagagcccaaatcagcatgcattgaaac 248
Query: 665 accagcatccatcctggagactgtattttactgctgtaagcaa 707
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 247 accagcatccatactggagactgtattttactgctgtaagcaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no545_g06.g1 MSMg01no545_g06.g1 CHROMAT_FILE:
MSMg01no545_g06.g1 PHD_FILE: MSMg01no545_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:20 2005
(620 letters)
>mm_chr2_140691445_140692466
Length = 1022
Score = 1100 bits (569), Expect = 0.0
Identities = 610/627 (97%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 1 ctgccaaggacttgtgcattgctttcaatggattccttggctgcaaagctgcagattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctgccaaggacttgtgcattgctttcaatggattccttggctgcaaagctgcagattaat 254
Query: 61 aagcattcatgaagtcaggctgtggtggcacatgcctttaatcctagtacttgggaggga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagcattcatgaagttaggctgtggtggcacatgcctttaatcctagtacttgggaggga 314
Query: 121 gaggcaggcagaactctaagttctaggccagtctaagttccaggacagggaaggtgacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaggcaggcagaactctaagttctaggccagtctaagttccaggacagggaaggtgacac 374
Query: 181 agagaaaccctgtttcaacaacctaaaacaaaaccaaccaact----aaccaaccaacca 236
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 375 agagaaaccctgtttcaacaacttaaaacaaaaccaaccaactaaccaaccaaccaacca 434
Query: 237 accaaccaaccaacaacaaagaacaaaaac--aaaaacaaaacaaaacaaaaaaactaaa 294
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 435 accaaccaaccaacaacaaagaacaaaaacaaaaaaacaaaacaaaacaaaaaaactaaa 494
Query: 295 caaaataaaacctctaaacatccatgtgtagtgaataaata--agtgccttaaatggtga 352
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 495 caaaataaaacctctaaacatccatgcgtagtgaataaataatagtgccttaaatggtga 554
Query: 353 agtatcagcattgggaaggcagagttgattatccatcaggttgttctctagaatactcca 412
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agtatcagcagtgggaaggcagagttgattatccatcaggttgttctctagaatactcca 614
Query: 413 atgctgctgtgcttttacccagacccttgtactgggtagccaagacccagtagttaaatg 472
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acgctgctgtgcttttacccaaacccttgtactgggtagccaagacccagtagttaaatg 674
Query: 473 ctttgtattggcaagattatacacaacaaacaacctttattgtagtataactcaacagga 532
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctttgtattggcaagattatatacaacaaacaacctttattgtagtataactcaacagga 734
Query: 533 tattctggagtggaattaatggaagtttactactttttcaggtgtatctttatatgttaa 592
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 735 tattccggagtggaattaatggaagtttactactttttcagttgtatctttatatgttaa 794
Query: 593 acatattgataccttctttgcttatgg 619
|||||||||||||||||||||||||||
Sbjct: 795 acatattgataccttctttgcttatgg 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
