XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAG
ATTCACAATAGTTGTGAACTAATGTCATAAGATAAATCATAAAAATTATT
ATAGTAAGCACTATAAAGATTTTAAAAACTTGTCGATGGATACTGAATTC
AAGGTGAACTCAGAACATTTTACTTTTACTCTGGGAGAAATATAAGACTA
TTCTCTCTGTTTCACAGATTAAATAAAATAAAAATAATAAAAGATAAAAG
GCATGTAGAGGCAGAGAAAGAACCCTAAACCAAAATTTCTCAGTTGTAAA
TTTTAAGGAATTACATTTCCATTTTAATGACAAATGTATCCCTATGTAAG
TCTACTTTTAAAACACTAGTGCTTTTAATGAGAGGTATAAAGTAACATGC
CCAATTTTAGTTATTTACTAAAAATAAATGTAATATCAGAATCATTTGTT
CTTTTGTATTTTCAAATCTTATTGTTTTAAAGTCAATGGTGTAGGATTTA
TGTTGCAGACATAAAAAAAAAAAAAACAAAAAACAAAAAACAAAAAACAC
CTTTCTACTCAAAAGAGGTTTTGTCCTGACTTTAGCTAAGAGTCAGCAAT
GGGAGCTAGAAAGCTTGAATGGACCAGCTCCTGTAATCAGGCAAGACTGC
CAATAGAGGGATTGGCAAACCAATCCAACCACCAAATCTTGGACCCACTA
TTTGTCCTGTCTACAAGATGTGTAGGGGTAAAAGATGAAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTATGGATGTAAGACACCAAACATGGATGGTGAGTTG
AACCTACTCTCGTGGTTCTACCCCTAAATTCAATATATCTCTGAAACCCA
ACTTAAGGATTTTATTATTTTATTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTTAGTTAGGGTTACTG
TTGCTGTGATGAAACATCATAACCCAAAGCAAGTTGGGGACAAAAGTGTT
TATTTGGCATACAGTTCCACATGACAGTTCAACATTAAAGTCAAAAGAAC
TCAAACAGTGCTGGAACATGGTGGCAGGAGGTGCAGAGACGATGGAAGAG
TGCTGCTCATCTAATAGAACCCATAACTACTCAAAATGGGGTAGTCCCTC
ATCTATCAATCGCTTATTAAGAAATATTCTACAGGTTTACCTGCAGCCTG
GTGTTATGGAGCCATGTTTTTAATTGGAATTGCTTTTCCTCAAATGCCTT
TAGCATATGTCAAGTTGACACAGCAGTATCAAATAACCTGGACCCCCGAG
ATATCTCAGACCCTGNGCCACCAACCAATCAGCATACATCAGCTGATATA
AGGCCCCCGACACACATATAACGGAGGACTGCCGGGTCTGGACTCAGACA
GAGAAGATGAACCTAACTCTCAAGAGACAGGAGGCC

Query= MSMg01no545_h01.b1 MSMg01no545_h01.b1 CHROMAT_FILE:
MSMg01no545_h01.b1 PHD_FILE: MSMg01no545_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:24 2005
         (670 letters)



>mm_chr2_100121920_100122989
          Length = 1070

 Score = 1243 bits (643), Expect = 0.0
 Identities = 662/671 (98%), Gaps = 5/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagattcacaatagttgtgaactaatgtcataagataaatcataaaaattat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagattcacaatagttgtgaactaatgtcataagataaatcataaaaattat 264

                                                                       
Query: 65  tatagtaagcactataaagattttaaaaacttgtcgatggatactgaattcaaggtgaac 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 tatagtaagcactataaagatttttaaaacttgtcgatggatactgaattcaaggtgaac 324

                                                                       
Query: 125 tcagaacattttacttttactctgggagaaatataagactattctctctgtttcacagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaacattttacttttactctgggagaaatataagactattctctctgtttcacagat 384

                                                                       
Query: 185 taaataaaataaaaataataaaagataaaaggcatgtagaggcagagaaagaaccctaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaataaaataaaaataataaaagataaaaggcatgtagaggcagagaaagaaccctaaa 444

                                                                       
Query: 245 ccaaaatttctcagttgtaaattttaaggaattacatttccattttaatgacaaatgtat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 ccaaaatttctcagttgtaaattttaaggaattacatttccattttaatgacacatgtat 504

                                                                       
Query: 305 ccctatgtaagtctacttttaaaacactagtgcttttaatgagaggtataaagtaacatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctatgtaagtctacttttaaaacactagtgcttttaatgagaggtataaagtaacatg 564

                                                                       
Query: 365 cccaattttagttatttactaaaaataaatgtaatatcagaatcatttgttcttttgtat 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 cccaattttagttatttactaaaaataaatgtaatatcagaatcatttgttcttctgtat 624

                                                                       
Query: 425 tttcaaatcttattgttttaaagtcaatggtgtaggatttatgttgcagacataaaaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttcaaatcttattgttttaaagtcaatggtgtaggatttatgttgcagacataaaaaaa 684

                                                                       
Query: 485 aaaaaa-----acaaaaaacaaaaaacaaaaaacacctttctactcaaaagaggttttgt 539
           ||||||     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaaaacaaaaacaaaaaacaaaaaacaaaaaacacctttctactcaaaagaggttttgt 744

                                                                       
Query: 540 cctgactttagctaagagtcagcaatgggagctagaaagcttgaatggaccagctcctgt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctgactttagctaagagtcagcaatgggagctagaaagcttgaatggaccagctcctgt 804

                                                                       
Query: 600 aatcaggcaagactgccaatagagggattggcaaaccaatccaaccaccaaatcttggac 659
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 805 aatcaggcaagactgccaatagagagattggcaaaccaatccaaccaccaaatcttggac 864

                      
Query: 660 ccactatttgt 670
           |||||||||||
Sbjct: 865 ccactatttgt 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)