Query= MSMg01no545_h05.b1 MSMg01no545_h05.b1 CHROMAT_FILE:
MSMg01no545_h05.b1 PHD_FILE: MSMg01no545_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:25 2005
(707 letters)
>mm_chr2_53694182_53695288
Length = 1107
Score = 1232 bits (637), Expect = 0.0
Identities = 688/705 (97%), Gaps = 2/705 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctaactataggattaggtgctgtcgttgaatcttttgaacccctcccccccct 63
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 204 ggaattcctaacaataggattaggtgctgtcattgaatcttttgaacccct-ccccccct 262
Query: 64 actttgttgccttatccatccttgaggtgaagataagtgcttggtcttattgtagcttga 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 263 actttgttgccttatccatccttgaggtgaggataagtgcttggtcttattgtagcttga 322
Query: 124 taatctgtatttggttgatattcctgaaaggcctgctcttttctgaggggaagagagtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taatctgtatttggttgatattcctgaaaggcctgctcttttctgaggggaagagagtgg 382
Query: 184 aggtagggtgtgggagctatggggaaaagagagatgtaggacagagagactggggaaagg 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 aggtagggtgtgggagctatggggaaaagagagatgtaggacggagagactggggaaagg 442
Query: 244 gagggtggggaaagtatagccttgatgtaatataagagagaataataaataaaacaggaa 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 443 gagggtggggaaagtatagccttgatgtaatataagagagaataataaataaaaaaggaa 502
Query: 304 aaaatataaggtcattacc-aaaagtgtgtatgttattgaaagctaactgatgttataga 362
|||||||||||||| |||| |||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 503 aaaatataaggtcactaccaaaaaatgtgtatgttattgaaaactaattgatgttataga 562
Query: 363 taatgagacagctctgtggatgaaaacacttgctagcaagcttgccaatctgagttgtat 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 563 taatgagacagctctgtggatgaaaacacttgctaccaagcttgccaatctgagttgaat 622
Query: 423 ccccagaacccacaatagggagagaaagagctggctcctgcaacttgtcctctactctcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccccagaacccacaatagggagagaaagagctggctcctgcaacttgtcctctactctcc 682
Query: 483 acacaggttctgtgtgtgtcaccttatttattaaataaataagtaagtgtagaaatacat 542
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acacaggtgctgtgtgtgtcaccttatttattaaataaataagtaagtgtagaaatacat 742
Query: 543 ttttaagaaaggagtacttctaaaattagccatacacagcaaactagagatttagcagta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttttaagaaaggagtacttctaaaattagccatacacagcaaactagagatttagcagta 802
Query: 603 cagtggacctcctaagaaggacaaacactgcctcaaacttaacgatgtaagtcatagtcc 662
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cagtggacctcctgagaaggacaaacactgcctcaaacttaacgatgtaagtcatagtcc 862
Query: 663 agtttcagtaaactaaagacaatggaaattatttgaaaggaccag 707
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 863 agtttcagtaaactaaagacaatggaaaccatttgaaaggaccag 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no545_h05.g1 MSMg01no545_h05.g1 CHROMAT_FILE:
MSMg01no545_h05.g1 PHD_FILE: MSMg01no545_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:25 2005
(665 letters)
>mm_chr2_53835175_53836239
Length = 1065
Score = 1044 bits (540), Expect = 0.0
Identities = 570/584 (97%), Gaps = 8/584 (1%)
Strand = Plus / Minus
Query: 90 tgaaacatatgtttataggctgaaacgtgaattagtgtgtaaagaggaagcttgcctagt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 tgaaacatatgtttataggctgaaacgtgaattagtgtgtaaagaggaagcttgcctagt 1006
Query: 150 gactcacgtgctttccaaacaacccttaactggctctctccaggaaataatcctttgcaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gactcacgtgctttccaaacaacccttaactggctctctccaggaaataatcctttgcaa 946
Query: 210 atcatagtgaatgtatttgatcattttcctttcccgtgtcagcttatttg-ccccctttc 268
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 945 atcatagtgaatgtatttgatcattttcctttcccgtgtcaacttatttgcccccctttc 886
Query: 269 caagttaaaggtg-------aactacataacggagtttagactttaaatttccctgtaat 321
||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 885 caagttaaaggtgacttggaaactacataacggagtttagactttaaatttcccggtaat 826
Query: 322 gaaaactgcatttgggaaaacttgtcttccttttatcacaaacgttccataactagatta 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 825 gaaaactgcatttgggaaaacttgtcttccttttatcacaaacgttccataactggatta 766
Query: 382 ggttagaacacaaaattggtgctaaaactcatgaatacagttaatcctttccagcctgct 441
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 765 ggttagaacacaaaattggtgctaaaactcacgaatacagttaatcctttccagcctgct 706
Query: 442 ctccagtcccgctgccattcctgagtacagtagtaatcctctgccaaggttactgggtaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctccagtcccgctgccattcctgagtacagtagtaatcctctgccaaggttactgggtaa 646
Query: 502 gagccagtggttcaaacttagccttcagtgtgattttataaatgaagttgcaatgaagca 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gagccagtggttcaaacttagccttcagtgtgattttataaatgaagttgcaatgaagca 586
Query: 562 gactcaggcccatttgtttgcatacccttgtcatccctttcacccaggaacatgacaaat 621
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 585 gactcaggcccatttgtttgcataaccttgtcatccttttcacccaggaacatgacaaat 526
Query: 622 gaacagtcaaaacagactggttggactgcataccgcacctaaaa 665
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaacagtcaaaacagactggttggactgcataccgcacctaaaa 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
