Query= MSMg01no545_j03.b1 MSMg01no545_j03.b1 CHROMAT_FILE:
MSMg01no545_j03.b1 PHD_FILE: MSMg01no545_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:34 2005
(344 letters)
>mm_chr2_108518797_108519536
Length = 740
Score = 580 bits (300), Expect = e-170
Identities = 330/342 (96%), Gaps = 8/342 (2%)
Strand = Plus / Plus
Query: 5 gaattctttatat-tactatttattctgcttccaggatggctatattttataggccattc 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttataaatactatttattctgcttccaggatggctatattttataggccattc 264
Query: 64 aagaagacatttcattaggtttttacaagaaaaatcaaaactaggatacaaagaaacata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaagacatttcattaggtttttacaagaaaaatcaaaactaggatacaaagaaacata 324
Query: 124 gcatgctataaaatattcagtaaggatctacccaaagtgatgctaatagtgtaaatccag 183
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 325 gcatgctataaaatattcagtaagggtctacccaaagtgatgctagtagtgtaaatccag 384
Query: 184 tcaacactaaatgacttntnctactacacacatggaaggacagagacctgttagtcagga 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaacactaaatgactt---ctactacacacatggaaggacagagacctgttagtcagga 441
Query: 244 gatctatttgcagagaaattt-aaaaaatgagatgtgcttgatattttcttatgcctcca 302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatctatttgcagagaaattttaaaaaatgagatgtgcttgatattttcttatgcctcca 501
Query: 303 acccattggatttttggttttgtttttggttttgagtttatg 344
|| ||||||||||||| ||||||||| ||||||||||||||
Sbjct: 502 actcattggatttttg-ttttgtttt--gttttgagtttatg 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 740
Length adjustment: 9
Effective length of query: 335
Effective length of database: 731
Effective search space: 244885
Effective search space used: 244885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_j03.g1 MSMg01no545_j03.g1 CHROMAT_FILE:
MSMg01no545_j03.g1 PHD_FILE: MSMg01no545_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:34 2005
(606 letters)
>mm_chr2_108619966_108620971
Length = 1006
Score = 1104 bits (571), Expect = 0.0
Identities = 598/607 (98%), Gaps = 2/607 (0%)
Strand = Plus / Minus
Query: 1 tttcattgtcacattcccctccctgcctcctcctcctcctcttcttcttcatcttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tttcattgtcacattcccctccctgcctcctcctcctcctcttcttcttcatcttttttt 785
Query: 61 cttgagactcatgttttagttttgaggatttaaaaaaaaatctcctctctctgagatatt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 784 cttgagactcatgttttagttttgaggattaaaaaaaaaatctcctctctctgagatatt 725
Query: 121 ttttatattctgtttttttggggggtgttgtttatgcttttgtttgtttgatttgttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttttatattctgtttttttggggggtgttgtttatgcttttgtttgtttgatttgttttt 665
Query: 181 gatttcctgaggaagaaactgagtcttctgcatagacccttggcttctcttctgtttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gatttcctgaggaagaaactgagtcttctgcatagacccttggcttctcttctgtttgtt 605
Query: 241 tttctttctttcttctttttttcctttttaattttaattgaaaaagttttcatgcattgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tttctttctttcttctttttttcctttttaattttaattgaaaaagttttcatgcattgt 545
Query: 301 attcatttttaagcacataaagtagtgttttttttaatttcttacaccatttctctctgc 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 544 attcatttttaagcacataaagtagtgtttttttaaatttcttacaccatttctctttgc 485
Query: 361 actctgttttttttt-agctttttaaatttatttatttatttacatctcaaattttgcct 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actctgttttttttttagctttttaaatttatttatttatttacatctcaaattttgcct 425
Query: 420 gacacctcgttcccccataagtgaatcttagccaaaatgtacagattacccatcatatat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gacacctcgttcccccataagtgaatcttagccaaaatgtacagattacccatcatata- 366
Query: 480 ccccccagaccctaaaaagttaaagttaaataagaaggaagggtcaagtgaagatacata 539
|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 365 cctcccagaccctaaaaagttaaagttaaacaagaaggaagggtcaagtaaagatacata 306
Query: 540 aaacattctctctctctctctctctctctctctctctctctctctctctctttctctctt 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 aaacattctctctctctctctctctctctctctctctctctctctctctctctctctctt 246
Query: 600 tctctct 606
|||||||
Sbjct: 245 tctctct 239
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
