BAC Information

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BAC

Clone NameMSMg01-545J23
Chromosome2 (Build37)
Map Location 50,499,963 - 50,528,253
singlet/doubletdoublet
Overlap genenone
Upstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545J23.T7 (MSMg01no545_j23.b1)MSMg01-545J23.TJ (MSMg01no545_j23.g1)
ACCAG610639AG610640
length743738
length of high quality
(start - end)		665 (35 - 699)589 (64 - 652)
definitionCHROMAT_FILE: MSMg01no545_j23.b1 PHD_FILE: MSMg01no545_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:39 2005CHROMAT_FILE: MSMg01no545_j23.g1 PHD_FILE: MSMg01no545_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,527,748 - 50,528,253)(50,499,963 - 50,500,551)
sequence
GCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTC
TTCATTGCTTCAGAATTCTTATTGCTTCACTGGTCTTTGAGTAGGTACTA
GAAGGATGTACTATCCTGGTTATGGCATAATCTCACTTTGAAACATCAAG
AAGCCCCATGACATCAGCCTTCAAACACAAGGAAAAGAGACTACACAAGA
ACAGACATAATAGTATGTACGGATCATTTTAAGCAGATCTAGATCCTGTA
CTGGTGTGAACAACAGCCTCTAATTCGAAGTCCTGTGAACACCATTACCA
ATAGTACTTTAGTTACCACAATGTTCTCAATAACCTACTAGGGCCTGTGT
GCTGGCTCATTGGGTAAAAAAGACTTGTCACTGAGCCTGATCACTTGAGC
TCAAGCTCAGAAGCCTAGTGGTCGGAGAAAGATGATTCCCACAAGATGCC
CTCTGACCTCCAGAGGTTCGGGGATGGATGTGTTCATGTGCACACACACA
CAAATAAATAAGGAAATGTTTATGTTAATAGGAATCGGTAACCTATGAGG
CAAGGATGATTACTTTTATTTTATGGAAGATGTAGTACAATTAAATTTAA
GCTTATCCCCTACTGGCTTAAAATAAATGAGACTTCAATTATGGTTATTT
TATTTGGCTTTGACAATTACCTGGGGTGTAACCCCTAATCTATTCTTCAA
ATACTGGCCTGGTTTCCTTCCCAGCCATGTGCCCCAGATACTN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTTAACTATTTTATTTATATCTTTTTATTGCTTC
TCACATTAACTCCCCCATTCCACTTTACATATCTTAAGTTTTAATTTATC
TACTAATGTGAACACTCAAAGAGTTTACTAGAAATCATTTCTTCTATAAA
ATACCAGGTTTCTTAGTCTTTTACTTGGGAGCTATATGGGCTACAGTGGG
CATAGAAATGCCCTATATATCTGGGAGCAGAAGGAGATATAGCAGCTCCC
CAATAAATTAATTCAATATATATGTTTGTAATAAATATATTAAATACATT
TCTACATATATATGTATATATATATACACAGCAAAGTGTAATATATATTA
TATATTTATATAATACATATTATATAAGGCATATTATTTCATATAATGCA
CATTGTTGTATATAATGTATAATATATAAATATATATTTATATGTATTGC
ACTTTGATGCATATGCCATGGTATCTCTGCAGAAGTCTGAGGATAATTTG
TAACAACCAGGTTCCTTCTTCAACCACTTGAGTTCCACTTAGAGAATTGG
ATCATCTGGCTTAGTAACAAGTGCCTGTCTCCACTGAGCTGTCTTATTGC
TTGTATTAGTGGTTCTCTTAGTACTGACAATAGATGGAAGAAATAAAGCA
TTTGTGATGCCTACTGTAAATTTTTTAATCTAAAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_j23.b1 MSMg01no545_j23.b1 CHROMAT_FILE:
MSMg01no545_j23.b1 PHD_FILE: MSMg01no545_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:39 2005
         (665 letters)



>mm_chr2_50527748_50528812
          Length = 1065

 Score =  978 bits (506), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtcttcattgcttcagaattcttattgcttcactggtctttgagtaggta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaattctttgtcttcattgcttcagaattcttattgcttcactggtctttgagtaggta 447

                                                                       
Query: 64  ctagaaggatgtactatcctggttatggcataatctcactttgaaacatcaagaagcccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctagaaggatgtactatcctggttatggcataatctcactttgaaacatcaagaagcccc 387

                                                                       
Query: 124 atgacatcagccttcaaacacaaggaaaagagactacacaagaacagacataatagtatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgacatcagccttcaaacacaaggaaaagagactacacaagaacagacataatagtatg 327

                                                                       
Query: 184 tacggatcattttaagcagatctagatcctgtactggtgtgaacaacagcctctaattcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacggatcattttaagcagatctagatcctgtactggtgtgaacaacagcctctaattcg 267

                                                                       
Query: 244 aagtcctgtgaacaccattaccaatagtactttagttaccacaatgttctcaataaccta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagtcctgtgaacaccattaccaatagtactttagttaccacaatgttctcaataaccta 207

                                                                       
Query: 304 ctagggcctgtgtgctggctcattgggtaaaaaagacttgtcactgagcctgatcacttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctagggcctgtgtgctggctcattgggtaaaaaagacttgtcactgagcctgatcacttg 147

                                                                       
Query: 364 agctcaagctcagaagcctagtggtcggagaaagatgattcccacaagatgccctctgac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agctcaagctcagaagcctagtggtcggagaaagatgattcccacaagatgccctctgac 87

                                                                       
Query: 424 ctccagaggttcggggatggatgtgttcatgtgcacacacacacaaataaataaggaaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  ctccagaggttcggggatggatgtgttcatgtgcacacacacacaaataaataaggaaat 27

                                     
Query: 484 gtttatgttaataggaatcggtaacc 509
           ||||||||||||||||||||||||||
Sbjct: 26  gtttatgttaataggaatcggtaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_j23.g1 MSMg01no545_j23.g1 CHROMAT_FILE:
MSMg01no545_j23.g1 PHD_FILE: MSMg01no545_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:39 2005
         (589 letters)



>mm_chr2_50499763_50500751
          Length = 989

 Score = 1139 bits (589), Expect = 0.0
 Identities = 589/589 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttaactattttatttatatctttttattgcttctcacattaactcccccattccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttaactattttatttatatctttttattgcttctcacattaactcccccattccac 260

                                                                       
Query: 61  tttacatatcttaagttttaatttatctactaatgtgaacactcaaagagtttactagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacatatcttaagttttaatttatctactaatgtgaacactcaaagagtttactagaa 320

                                                                       
Query: 121 atcatttcttctataaaataccaggtttcttagtcttttacttgggagctatatgggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatttcttctataaaataccaggtttcttagtcttttacttgggagctatatgggcta 380

                                                                       
Query: 181 cagtgggcatagaaatgccctatatatctgggagcagaaggagatatagcagctccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgggcatagaaatgccctatatatctgggagcagaaggagatatagcagctccccaa 440

                                                                       
Query: 241 taaattaattcaatatatatgtttgtaataaatatattaaatacatttctacatatatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattaattcaatatatatgtttgtaataaatatattaaatacatttctacatatatat 500

                                                                       
Query: 301 gtatatatatatacacagcaaagtgtaatatatattatatatttatataatacatattat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatatatatatacacagcaaagtgtaatatatattatatatttatataatacatattat 560

                                                                       
Query: 361 ataaggcatattatttcatataatgcacattgttgtatataatgtataatatataaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaggcatattatttcatataatgcacattgttgtatataatgtataatatataaatat 620

                                                                       
Query: 421 atatttatatgtattgcactttgatgcatatgccatggtatctctgcagaagtctgagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatttatatgtattgcactttgatgcatatgccatggtatctctgcagaagtctgagga 680

                                                                       
Query: 481 taatttgtaacaaccaggttccttcttcaaccacttgagttccacttagagaattggatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatttgtaacaaccaggttccttcttcaaccacttgagttccacttagagaattggatc 740

                                                            
Query: 541 atctggcttagtaacaagtgcctgtctccactgagctgtcttattgctt 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctggcttagtaacaagtgcctgtctccactgagctgtcttattgctt 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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