Query= MSMg01no545_l03.b1 MSMg01no545_l03.b1 CHROMAT_FILE:
MSMg01no545_l03.b1 PHD_FILE: MSMg01no545_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:44 2005
(682 letters)
>mm_chr2_65520434_65521515
Length = 1082
Score = 1274 bits (659), Expect = 0.0
Identities = 668/671 (99%)
Strand = Plus / Minus
Query: 12 gaattccaagggtatagctttgtctgcactttgaaaacttgagaatgggccgacacaaga 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 gaattccaagggtatagctttgtctgcactttgaaaacttgagaatgggccgacacaaga 823
Query: 72 aagacatctgcaagctgagccccatgcagctcatgctccgccttgcttttccacttatct 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aagacatctgcaagctgagccccatgcagctcatgctccgccttgcttttccacttatct 763
Query: 132 cctcttaaagagatagccagttttcgaactaattgatcaaatttgcattggcctaagtgt 191
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 762 cctcttaaagaggtagccagttttcgaactaattgatcaaatttgcattggcccaagtgt 703
Query: 192 ctcacatctcagcttctatgccgaaagcttgatgctggaagatgcaaaccaggtagcctg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctcacatctcagcttctatgccgaaagcttgatgctggaagatgcaaaccaggtagcctg 643
Query: 252 ttactggaagtgcctcatgcaaaacttgttaaactcaaaggctgatttagaacagatcga 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttactggaagtgcctcatgcaaaacttgttaaactcaaaggctgatttagaacagatcga 583
Query: 312 gagaaagcaaccagtcaaaagcaaagaagcaaacctgcccaacctggaacgggtcagttc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gagaaagcaaccagtcaaaagcaaagaagcaaacctgcccaacctggaacgggtcagttc 523
Query: 372 ctgcttttgatcattgtcttgcagtatgcaacaagcaatcaggcttttgccaaaaaaagc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctgcttttgatcattgtcttgcagtatgcaacaagcaatcaggcttttgccaaaaaaagc 463
Query: 432 tgtgagcagtgcaccaatgcagctaaagtcagcctcggtgtttaacctggctctcacctg 491
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgtgagcagtgcaccagtgcagctaaagtcagcctcggtgtttaacctggctctcacctg 403
Query: 492 gaatgactgatattgttttcaatgctcggagaactctgaacgttctcagcgctgagacat 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaatgactgatattgttttcaatgctcggagaactctgaacgttctcagcgctgagacat 343
Query: 552 tgcccaggtccacaaactctgtcacatatctgtaatagggagtccacacacaaacacaat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgcccaggtccacaaactctgtcacatatctgtaatagggagtccacacacaaacacaat 283
Query: 612 gacagaacacaagaaacagttggagatataaggagcctaccaccttataccggcttcttc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gacagaacacaagaaacagttggagatataaggagcctaccaccttataccggcttcttc 223
Query: 672 ttacctggaat 682
|||||||||||
Sbjct: 222 ttacctggaat 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_l03.g1 MSMg01no545_l03.g1 CHROMAT_FILE:
MSMg01no545_l03.g1 PHD_FILE: MSMg01no545_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:44 2005
(615 letters)
>mm_chr2_65326563_65327576
Length = 1014
Score = 1127 bits (583), Expect = 0.0
Identities = 607/615 (98%), Gaps = 1/615 (0%)
Strand = Plus / Plus
Query: 1 tcgattttgtcacacaggtagacaaagaaagtctttttaggaccttggtgagataacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgattttgtcacacaggtagacaaagaaagtctttttaggaccttggtgagataacttg 260
Query: 61 gatatgaaaattcatatcctggtttaaaacattttatatgaacaacaaacagccatatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatgaaaattcatatcctggtttaaaacattttatatgaacaacaaacagccatatac 320
Query: 121 tgaggccatttgttgcttgtccaaggcaagaagtgactaaaaccaataactcactttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggccatttgttgcttgtccaaggcaagaagtgactaaaaccaataactcactttcca 380
Query: 181 accacttactgagtggttaaaaaatataaactgccaccatctggtttctccttgacatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacttactgagtggttaaaaaatataaactgccaccatctggtttctccttgacatat 440
Query: 241 gttaagtgtgcaataccctcagtgctccttttatgtaaaaatagccatattcataaaagc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaaatgtgcaataccctcagtgctccttttatgtaaaaatagccatattcataaaagc 500
Query: 301 atggtatgtaaaatggaaagtaattacattgtaggtgaagagtaaggcaaagggcattaa 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtatgtaaa-tggaaagtaattacattgtaggtgaagagtaaggcaaagggcattaa 559
Query: 361 gaaagcaggagagaaagaccacttatcctgaaacgggagataaacatttccatcagaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaagcaggagagaaagaccacttatcctgaaacgggagataaacatttccatcagaacc 619
Query: 421 agacataattggggtttcctccacagaagaacgccaagacagttctttaaaggtggagat 480
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 620 agacataattggggtttcctccacagaagaacaccaagacagttttttaaagatggagat 679
Query: 481 gggttaaagtggctatttacatacccatctctgcctcttgaaatgttatttgaaagacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggttaaagtggctatttacatacccatctctgcctcttgaaatgttatttgaaagacaa 739
Query: 541 gtcaagaaatcaaaagctaaaatcatttcccatcgtttatcaatgtctgaaaacaacaca 600
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 740 gtcaagaaatcaaaagctaaagtcattttccatcgtttatcaatgtctgaaaacaacaca 799
Query: 601 gtactttttccagta 615
|| ||||||||||||
Sbjct: 800 gtgctttttccagta 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
