Query= MSMg01no545_l09.b1 MSMg01no545_l09.b1 CHROMAT_FILE:
MSMg01no545_l09.b1 PHD_FILE: MSMg01no545_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:45 2005
(691 letters)
>mm_chr2_33068031_33069121
Length = 1091
Score = 1237 bits (640), Expect = 0.0
Identities = 676/688 (98%), Gaps = 1/688 (0%)
Strand = Plus / Plus
Query: 5 gaattccagcactcacgaggtggagttgggaaaatggcaagttcaaggtcttcctcggct 64
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccagcactcaggaggtagagttgggaaaatggcaagttcaaggtcttcctcggct 263
Query: 65 acacggagagttcagtcattttaggatacaagaaaccctgtatcaaaaccaaaagcagac 124
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 acacggagagttcagtcattttaggatacaagagaccctgtatcaaaaccaaaagcagat 323
Query: 125 gaggaaacatctgtctacacaggtactgactgcctagtagtagtacagtcagcattcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggaaacatctgtctacacaggtactgactgcctagtagtagtacagtcagcattcaca 383
Query: 185 ggttgtatggagccacaatgtcttaaactaatgtgctatacagctcaattaatattttaa 244
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 ggttgtatggagccagaatgtcttaaactaatgtgctttacagctcaattaatattttaa 443
Query: 245 aaatgtttttattttatgtgcatgagtgttttgcctctctgtgtgtctgtgctccactgt 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 aaatgtttttattttatgtgcatgagtgtttggcctctctgtgtgtctgtgctccactgt 503
Query: 305 gtgcctggcacccaggaagaccagaagagagttacaggtggttgtgggccatcacgtggg 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 gtgcctggcacccaggaagaccagaagagagttacaggtggttgtgggccatcacgtgtg 563
Query: 365 tactgagaatcacactcagaccctctagagaggcacctagcactctaacagcttagccat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tactgagaatcacactcagaccctctagagaggcacctagcactctaacagcttagccat 623
Query: 425 ctcttcagccccttatccattttcataatagctctctgaggccgatcctcatagcacccc 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 624 ctcttcagccccttatcgattttcataatagctctctgaggccgatcctcataccacccc 683
Query: 485 cattttgtagac-agggaaagcgaggttcagaggttcagagcaggaaaaggagaaaccga 543
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cattttgtagacgagggaaagcgaggttcagaggttcagagcaggaaaaggagaaaccga 743
Query: 544 ctctgaagcttgagttcgcctgcagggcacctggttgtcttgagccatcaaaagggcaag 603
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctctgaagcttgagtttgcctgcagggcacctggttgtcttgagccatcaaaagggcaag 803
Query: 604 ggttgtacacagatgggtgggacaaggccactctggtggttttgacattgttggagcttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggttgtacacagatgggtgggacaaggccactctggtggttttgacattgttggagcttt 863
Query: 664 gggttatgcaaacagcagtaccacgata 691
||||||||||||||||||||||||||||
Sbjct: 864 gggttatgcaaacagcagtaccacgata 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_l09.g1 MSMg01no545_l09.g1 CHROMAT_FILE:
MSMg01no545_l09.g1 PHD_FILE: MSMg01no545_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:46 2005
(601 letters)
>mm_chr2_33224532_33225532
Length = 1001
Score = 988 bits (511), Expect = 0.0
Identities = 542/553 (98%), Gaps = 6/553 (1%)
Strand = Plus / Minus
Query: 51 acacctttaatcccagtacttgggaggcagaagcaggcaatttctgatttcgaggccagc 110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1001 acacctttaatcccagtacttgggaggcagaagcaggcaatttctgatttcgaggctagc 942
Query: 111 ctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaa 882
Query: 171 aaaaaaaaaaaa-aaaacaaaaaca-aaacacacacacacacacacaaagaaaaagagaa 228
|||||||||||| ||||| |||||| | |||||||||||||||||||||||||| ||||
Sbjct: 881 aaaaaaaaaaaacaaaac-aaaacacacacacacacacacacacacaaagaaaa--agaa 825
Query: 229 aaaagaaaaaaaagaaaaataaaagtctctttctcttgagagtttgaatcacatttgtgt 288
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaaag-aaaaaaagaaaaataaaagtctctttctcttgagagtttgaatcacatttgtgt 766
Query: 289 tggggaattccctcctccaaactagaggtggtttagattatggtactccctgtgcagcct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tggggaattccctcctccaaactagaggtggtttagattatggtactccctgtgcagcct 706
Query: 349 tgggcaggaatgcagcctggggagccatgatgaatggaaagggaagcgtgtttcccttgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgggcaggaatgcagcctggggagccatgatgaatggaaagggaagcgtgtttcccttgt 646
Query: 409 tggctgacctttggaccccaggtccagtgtggatcttagctgatggattaggcctatagt 468
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 645 tggctgacctttggaccccaggtccagtgtggatcttagctgatgggctaggcctatagt 586
Query: 469 agagcccattggaatactcccactaccaacttgattctgccacgtttcagaaagaagact 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agagcccattggaatactcccactaccaacttgattctgccacgtttcagaaagaagact 526
Query: 529 ttaggatgaagagcacagcagaccttcattaggtatttatggagacagaagggagaaata 588
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttaggatgaagagcacggcagaccttcattaggtatttatggagacagaagggagaaata 466
Query: 589 tggtagggcctct 601
|||||||||||||
Sbjct: 465 tggtagggcctct 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
