BAC Information

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BAC

Clone NameMSMg01-545L24
Chromosome2 (Build37)
Map Location 104,934,438 - 105,103,635
singlet/doubletdoublet
Overlap geneWt1, 0610012H03Rik
Upstream geneCd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356
Downstream geneRcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545L24.T7 (MSMg01no545_l24.b1)MSMg01-545L24.TJ (MSMg01no545_l24.g1)
ACCAG610737AG610738
length737734
length of high quality
(start - end)		667 (37 - 703)584 (63 - 646)
definitionCHROMAT_FILE: MSMg01no545_l24.b1 PHD_FILE: MSMg01no545_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:49 2005CHROMAT_FILE: MSMg01no545_l24.g1 PHD_FILE: MSMg01no545_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,934,438 - 104,935,135)(105,103,053 - 105,103,635)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTCCTGAT
GCTATTACATTCTGGACTTGGGTACAAACATAGAGAAGAGAGACTTTCAA
GGTAGAGTTCATGTCATCAATCAATCAATCAATCAATAGCTTTGGAAAAG
TGGCTTTGGGAATGATATTTAGTGTTTTCCAGGGATGGGTCAAGCCTCTG
TGTCAGAAGTCACTGACTTAGCTCTGATCCTGGTAGACATGGAGATAGTC
TCCCCAAACCATTCTCTCTGCCTGGCTTCTGAGTTCTTGATGAGCTGTGT
GGATACAGATCCTGTGCATTCCATATCAGGACCCATCCAATGAAGCAGCT
TTACTTCAGCTGCTGTAGGGTACTGAGAGACCTAGACATAAGGGGTTTAA
ATGAACATATATGCCAGCCTTGGGGTTCGGAATGGTGAAGAGGCTATGGA
TCACAAGGTTGGGCTGAAGAGAGTTAATTAAACTAATTACTTATAAAAGA
GACTGTAAAGGAAGAGAAGAGAAGTAAAAATGTTACAAAATACAAAATTA
TACATATTCATAAAAAAGGAATGGTCTACTGTTGTGAGCTACAGAATTAA
GAAACTTTAAAAACAACATACTCAGTGGAAAAAAAAAGCAGACACAAATG
GAGAGGCAGTATTCAGATCTGTGATCCGCAGGGGCTAGGGCAGTGGCTCT
CAATCTTCCTAATGCTGCAACCCTTTAATACAGTTCN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTTCCGAATTCCCCTCCCATGTCTGGATCTGCTTCCAGCCTTGTGTT
GGAAAAGCTGCACAGCAGGCAGCCAGCAGCTGCAGACAGGGAGGTGTCCG
AGAAGCCAGGTGACCCATTCAGAGCTTTGCAGTATTGCTCAGCTCACAAG
CCTCTGAAATAGCTTAGTGTATACATCCTAGGTGAACTACCCAAGGGGCC
CTGATGGCTCTAGGTTGGGTTTTGGTTTGTTCAGTTGGTTGGTTTGGTTT
TGATTTTTTGTAACTCAGCTTTATACTTCCCAAGTAAACCTGATGTGCCC
AGCCAGTTTTCACGACCCACTATGTTCCTTTCTTCCTATGGCTGAACTCT
CTGATCAAAGAATTGACAGTCAATTCTTAATGGAGTGCTTAGGATGAACA
GTGCCCCCCTCAGGGGGATGGTGACAGAGGGCAGGGTTACAGAAGCTGAC
CAAGAAGGTGAATTTTAAGGACCAAGACTCAGACCATGGAGCCTAATCCT
GCTTCAGCCAGGATGGGTCCATGTTATTAGTCTTCCTACAATTTTAGCCA
AATACAATGTTGTGAGTGACTCTGAAAATATAAATATCATTTGCAACAGG
GATTCCATAGGAAGACATTCTCATGAATCTGATTCCATGGTAAAATACAT
GTCCTTGCTCCTGGCAACTTTCCCTGGTTTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_l24.b1 MSMg01no545_l24.b1 CHROMAT_FILE:
MSMg01no545_l24.b1 PHD_FILE: MSMg01no545_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:49 2005
         (667 letters)



>mm_chr2_104934269_104935335
          Length = 1067

 Score = 1094 bits (566), Expect = 0.0
 Identities = 649/698 (92%), Gaps = 34/698 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctgatgctattacattctggacttgggtacaaacatagagaagagagactttca 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gaattcctgatgctataatattctggacttgggtacaaacatagagaagagagactttca 229

                                                                       
Query: 64  aggtagagttcatgtcatcaatcaatcaatcaatcaat------------agctttggaa 111
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 230 aggtagagttcatgtcatcaatcaatcaatcaatcaatcaatcaatcaatagctttggaa 289

                                                                       
Query: 112 aagtggctttgggaatgatatttagtgttttccagggatgggtcaagcctctgtgtcaga 171
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 290 aagtggctttgggaatgatatttagtattttccagggatgggtcaagcctctgtgtcaga 349

                                                                       
Query: 172 agtcactgacttagctctgatcctggtagacatggagatagtctccccaaaccattctct 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtcactgacttagctctgatcctggtagacatggagatagtctccccaaaccattctct 409

                                                                       
Query: 232 ctgcctggcttctgagttcttgatgagctgtgtggatacagatcctgtgcattccatatc 291
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 410 ctgcctggcttctgagttcttgatgagatgtgtggatacagatcctgtgcatcccatatc 469

                                                                       
Query: 292 aggacccatccaatgaagcagctttacttcagctgctgtagggtactgagagacctagac 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aggacccatccaatgaagcagctttacttcagctgctgtagggtactgagagacctagac 529

                                                                       
Query: 352 ataaggggtttaaatgaacatatatgccagccttggggttcggaatggtgaagaggctat 411
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 530 ataagaggttcaaatgaacatatatgccagccttggggttcggaatggtgaagaggctac 589

                                                                       
Query: 412 ggatcacaaggttgggctgaagagagttaattaaactaattacttataaaagagactgta 471
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggattacaaggttgggctgaagagagttaattaaactaattacttataaaagagactgta 649

                                                                       
Query: 472 aaggaagagaagagaagtaaaaatgttacaaaatacaaaattatacatatt--------- 522
           |||||||||||||||||||||||||||||| ||||||||||||||||||||         
Sbjct: 650 aaggaagagaagagaagtaaaaatgttacacaatacaaaattatacatatttatgtgtgg 709

                                                                       
Query: 523 -------------cataaaaaaggaatggtctactgttgtgagctacagaattaagaaac 569
                        |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 710 aataacatttattcataaaaaaggaatggtctactgttgtgagctacagaactaagaaac 769

                                                                       
Query: 570 tttaaaaacaacatactcagtggaaaaaaaaagcagacacaaatggagaggcagtattca 629
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 770 cttaaaaacaacatactcagtgaaaaaaaaaagcagacacaaatggagaggcagtatgca 829

                                                 
Query: 630 gatctgtgatccgcaggggctagggcagtggctctcaa 667
           |||||||||||||||||| |||||||||||||||||||
Sbjct: 830 gatctgtgatccgcagggactagggcagtggctctcaa 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_l24.g1 MSMg01no545_l24.g1 CHROMAT_FILE:
MSMg01no545_l24.g1 PHD_FILE: MSMg01no545_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:49 2005
         (584 letters)



>mm_chr2_105102853_105103835
          Length = 983

 Score = 1044 bits (540), Expect = 0.0
 Identities = 573/584 (98%), Gaps = 1/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccctcccatgtctggatctgcttccagccttgtgttggaaaagctgcacagcaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tcccctcccatgtctggatctgcttccagccttgtgttggaaaagctgcacagcaggcag 724

                                                                       
Query: 61  ccagcagctgcagacagggaggtgtccgagaagccaggtgacccattcagagctttgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ccagcagctgcagacagggaggtgtccgagaagccaggtgacccattcagagctttgcag 664

                                                                       
Query: 121 tattgctcagctcacaagcctctgaaatagcttagtgtatacatcctaggtgaactaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 663 tattgctcagctcacaagcctctgaaatagcttagtgtatacatcctaggtgaaccaccc 604

                                                                       
Query: 181 aaggggccctgatggctctaggttgggttttggtttgttcagttggttggtttggttttg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaggggccctgatggttctaggttgggttttggtttgttcagttggttggtttggttttg 544

                                                                       
Query: 241 attttttgtaactcagctttatacttcccaagtaaacctgatgtgcccagccagttttca 300
           | |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 543 a-tttttgtaactcagttttatacttcccaagtaaacctgatgtgcccagacaggtttca 485

                                                                       
Query: 301 cgacccactatgttcctttcttcctatggctgaactctctgatcaaagaattgacagtca 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cgacctactatgttcctttcttcctatggctgaactctctgatcaaagaattgacagtca 425

                                                                       
Query: 361 attcttaatggagtgcttaggatgaacagtgcccccctcagggggatggtgacagagggc 420
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 424 attcttaatggagtgctaaggatgaacagtgtccccctcagggggatggtgacagagggc 365

                                                                       
Query: 421 agggttacagaagctgaccaagaaggtgaattttaaggaccaagactcagaccatggagc 480
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acggttacggaagctgaccaagaaggtgaattttaaggaccaagactcagaccatggagc 305

                                                                       
Query: 481 ctaatcctgcttcagccaggatgggtccatgttattagtcttcctacaattttagccaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctaatcctgcttcagccaggatgggtccatgttattagtcttcctacaattttagccaaa 245

                                                       
Query: 541 tacaatgttgtgagtgactctgaaaatataaatatcatttgcaa 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tacaatgttgtgagtgactctgaaaatataaatatcatttgcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space:   558502
Effective search space used:   558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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