Query= MSMg01no546_a14.b1 MSMg01no546_a14.b1 CHROMAT_FILE:
MSMg01no546_a14.b1 PHD_FILE: MSMg01no546_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:11 2005
(709 letters)
>mm_chr2_180186139_180187245
Length = 1107
Score = 1321 bits (683), Expect = 0.0
Identities = 699/705 (99%), Gaps = 2/705 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccatcctctgacctcccagacactgggattataccgtggcaccagatccaact 64
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 907 gaattcaccatcctctgacctcccagaaa--gggattataccgtggcaccagatccaact 850
Query: 65 ataggactccactcaaaattttgtatgagagagtagatctttcagaaggttgaaggggac 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 849 ataggactccactcaaaattttgtatgagagagtagatctttcagaaggttaaaggggac 790
Query: 125 cacagtcaaaggtgaaacctagccttggggacgtttagagccacgtgtgtgacagcacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cacagtcaaaggtgaaacctagccttggggacgtttagagccacgtgtgtgacagcacac 730
Query: 185 cttgctgtatttggtaaggaactatgctcagtaagaagatactaggatggtgcagtcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cttgctgtatttggtaaggaactatgctcagtaagaagatactaggatggtgcagtcctg 670
Query: 245 aggcggccatgccagagaagggactttcagggttggagtagtcttaggaagaacccagcc 304
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aggcagccatgccagagaagggactttcagggttggagtagtcttaggaagaacccagcc 610
Query: 305 tggaattgtccagatgtctgggatggtgacaccatgcaattaagactgtggtgtgaggga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tggaattgtccagatgtctgggatggtgacaccatgcaattaagactgtggtgtgaggga 550
Query: 365 catgaaggtccctggtggcaaaattccataggcggtaaaagtattgtctgtcctcaaggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 catgaaggtccctggtggcaaaattccataggcggtaaaagtattgtctgtcctcaaggt 490
Query: 425 tctaattccatcctggggcgccagtggagtgtggtgtgggctgaaagctctgcccttgcc 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 489 tctaattccatcctggggcgccagtggagtgtggtgtgagctgaaagctctgcccttgcc 430
Query: 485 agtcctggcctcagacactgcatcggcattcccaagccttggttttggttcttctcacag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agtcctggcctcagacactgcatcggcattcccaagccttggttttggttcttctcacag 370
Query: 545 ggcctcatgccgggcacacagcaagctgtctgaaccgtcatctttccattttctttcttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggcctcatgccgggcacacagcaagctgtctgaaccgtcatctttccattttctttcttg 310
Query: 605 gctactctgctgaaccgtcaatgtgaactgagacactctttctgcgagtctcaccacttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctactctgctgaaccgtcaatgtgaactgagacactctttctgcgagtctcaccacttt 250
Query: 665 tgtacaaatgccactgactagtctggctgacagtgacaggcattt 709
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtacaaatgccactgactagtctggctgacagtgacaggcattt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1107
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1097
Effective search space: 766803
Effective search space used: 766803
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_a14.g1 MSMg01no546_a14.g1 CHROMAT_FILE:
MSMg01no546_a14.g1 PHD_FILE: MSMg01no546_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:11 2005
(634 letters)
>mm_chr2_180026261_180027294
Length = 1034
Score = 1172 bits (606), Expect = 0.0
Identities = 627/634 (98%)
Strand = Plus / Plus
Query: 1 tctgtggggaggaaaagccacatgcttcatgccagcagtgtaggcttatctctcgaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtggggaggaaaagccacatgcttcatgccagcagtgtaggcttatctctcgaccag 260
Query: 61 agctgaagtttggaccctgcaattctgtcccgtttccttggtccccaggtcctgccccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgaagtttggaccctgcaattctgtcccgtttccttggtccccaggtcctgccccag 320
Query: 121 ccagttgaatcctagctcttctgtgacttgggtcacaatctctccgggccatggacttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ccagttgaatcctagctcttctgtgacttgggtcacaatctctccgggccagggacttgt 380
Query: 181 ctgcacagtatgctttgtaggcagctcagaaggaaccctgaagtgaggttgcagctaaag 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ctgcacagtatgctttgtaggcagctcagaaggaaccctgaggtgaggttgcagctaaag 440
Query: 241 cttttgccagggtctacctcagtaggcactcagctgtgagaccctgcttggggcttgaag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cttttgccagggtctacctcagtaggcactcagctgtgagaccctgcttggggcttgatg 500
Query: 301 gatagatagggaagtggtgttaaccagtgttaacctgtcagtaacttagcagagactgct 360
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gataaacagggaagtggtgttaaccagtgttaacctgtcagtaacttaacagagactgct 560
Query: 361 ttctcagaggtcagttcacacacactggctctgcagcccagcagccagactgatgtcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcagaggtcagttcacacacactggctctgcagcccagcagccagactgatgtcctg 620
Query: 421 gcagctgtatttatttataaccaattgcaactgggctggccagggaataaacaacggagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagctgtatttatttataaccaattgcaactgggctggccagggaataaacaacggagc 680
Query: 481 caagctctgaaatggaaaactcctcgctgatccagaggctgggttctgatgtccatgcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagctctgaaatggaaaactcctcgctgatccagaggctgggttctgatgtccatgcct 740
Query: 541 ctgctccacgtgagatggcgcagaataggtggtagagaacaggatttcctcagacaagca 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgctccacgtgagatggcgcagactaggtggtagagaacaggatttcctcagacaagca 800
Query: 601 gcccaggaactggcttcttgggtgatgggactgt 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 gcccaggaactggcttcttgggtgatgggactgt 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
