BAC Information

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BAC

Clone NameMSMg01-546C20
Chromosome2 (Build37)
Map Location 29,223,368 - 29,384,216
singlet/doubletdoublet
Overlap geneCrsp8
Upstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546C20.T7 (MSMg01no546_c20.b1)MSMg01-546C20.TJ (MSMg01no546_c20.g1)
ACCAG611063AG611064
length750719
length of high quality
(start - end)		450 (34 - 483)490 (67 - 556)
definitionCHROMAT_FILE: MSMg01no546_c20.b1 PHD_FILE: MSMg01no546_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:23 2005CHROMAT_FILE: MSMg01no546_c20.g1 PHD_FILE: MSMg01no546_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,223,368 - 29,223,813)(29,383,727 - 29,384,216)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTCCA
AAGTTGAGGCTCATCCTGTGTCTCTCAAGACTTCACCCAGGCTACTTTGC
ACCCATCTTTTCTTTTTCTTTTAATACCTCTTAATGCTATGGGAATGGTT
GTCTGTCAGAAAGGGTTTGGTATTGTCATTTAGTCGATGAAGATGGCCAA
AGTATCAACAGCTGTTAGGAGATGTGACATTTCAGGATATTTTTCTCTGG
AAAAAGGAATATTTCAAAATGTTGAAGTTGGAATCTCGAGCAATACATGA
TTGGCAGAGTGCATGACACTAGGAAGCCCTGAATGAAGGCTCTGCAGGAG
CAGGAAGCGTGTCCTGAAGGTTCCACAGAGGCATGGGCCACTGCTTTGGG
GATGGACCAGCACGCCCAAGCAGTGTGCAGTGGCTTTCCCCTGAAAGTGC
CACTCTCCTGGCTGGTATCGGAGAAAGAGCTTCCTGAGCTGGATGTAGTG
TCTGTCACAGGGTCATGCTCTACCGTCTGGCTTCATGGCAGAGACCGGAT
TCCTCCTCATACATTTCTTACACTAATCAAGTCTTGTCAAAACCATAACA
AAAACCAGTAGAGATCAATATTTTTAACTGCTTTTTGTTAATGATTTTCT
ACCCTGGAAAAGGGACTTCTTTTTCTAGTTTCCTCACGTAACCCCACCAA
AAAAGAGCAAGTTTCCAAACGTGGACCCTTGGCTTAGGCTTGGTTGGCTN


TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGGCTGAAGATGTCCTTCCTCCGCTCAACTG
GGGTGACCTTAAAGGTTCTCAATTTAGCATCAGCCTCACTCGCTGACACT
CCAAATGTAACGGCAACTTCTCGCATTAACACTGAAAGATCACCATTTTG
TGGTGTCCATGGTGTTAGTGTTAAAACATCACTCGATACCAAAAGGCCAA
TTCCCGATTTAGTTCAGGAGGAAAAAAAATCTGGACCACCTTTCACAGGC
CTGCTTGCTCTGCTCTGTCAGTTGCTAATGGGAGCCAGAATCTGTGGGCA
GCAGAAGGCATGGGGCAAGGGCCTGGCTACCTGGAAGCAGTAACTTCCAG
CAGGTAAGCAGGAAGCTGTGGGGAGGGAACTCAGACTTTATCTAGCCGCC
CTTCATGTCAGTCACGTGTCAATGGGGGAGATTCCTCCACTAGGCTCCTC
ATCTGTAAAGTGGGAACTCCATACACCTGCCTGGGATGGAGCTTGCTGGT
AGAGAAGAGATTAAGGATAGAGGGTGACAATACAGTCCCATAAGAACAAT
AAATACCTTGGAGGTCTGGCCAGACGCCACCCTTAGAGAGGGTGAAGGGT
CTCATGTTGCCCAAGCTGGCCTTGAAACTGCCATATATTTAGAATGATCT
TGAGTTTAGGAAAGATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_c20.b1 MSMg01no546_c20.b1 CHROMAT_FILE:
MSMg01no546_c20.b1 PHD_FILE: MSMg01no546_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:23 2005
         (450 letters)



>mm_chr2_29223164_29224013
          Length = 850

 Score =  816 bits (422), Expect = 0.0
 Identities = 440/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttccaaagttgaggctcatcctgtgtctctcaagacttcacccaggctactt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcatttccaaagttgaggctcatcctgtgtctctcaagacttcacccaggctgctt 264

                                                                       
Query: 65  tgcacccatcttttctttttcttttaatacctcttaatgctatgggaatggttgtctgtc 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcgcccatcttttctttttcttttaatacctcttaatgctatgggaatggttgtctgtc 324

                                                                       
Query: 125 agaaagggtttggtattgtcatttagtcgatgaagatggccaaagtatcaacagctgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaagggtttggtattgtcatttagtcgatgaagatggccaaagtatcaacagctgtta 384

                                                                       
Query: 185 ggagatgtgacatttcaggatatttttctctggaaaaaggaatatttcaaaatgttgaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagatgtgacatttcaggatatttttctctggaaaaaggaatatttcaaaatgttgaag 444

                                                                       
Query: 245 ttggaatctcgagcaatacatgattggcagagtgcatgacactaggaagccctgaatgaa 304
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 445 ttggaatctcgagcaatacatgattggcagagtacatgacactaggaagcactgaatgaa 504

                                                                       
Query: 305 ggctctgcaggagcaggaagcgtgtcctgaaggttccacagaggcatgggccactgcttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctctgcaggagcaggaagcgtgtcctgaaggttccacagaggcatgggccactgcttt 564

                                                                       
Query: 365 ggggatggaccagcacgcccaagcagtgtgcagtggctttcccctgaaagtgccactctc 424
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 565 ggggatggaccagcacgcccaagcggtgtgcagtgcctttcccctgaaagtgccactctc 624

                                     
Query: 425 ctggctggtatcggagaaagagcttc 450
           ||||||||||||||||||||||||||
Sbjct: 625 ctggctggtatcggagaaagagcttc 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_c20.g1 MSMg01no546_c20.g1 CHROMAT_FILE:
MSMg01no546_c20.g1 PHD_FILE: MSMg01no546_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:23 2005
         (490 letters)



>mm_chr2_29383527_29384416
          Length = 890

 Score =  901 bits (466), Expect = 0.0
 Identities = 484/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggctgaagatgtccttcctccgctcaactggggtgaccttaaaggttctcaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttctggctgaagatgtccttcctccgctcaactggggtgaccttaaaggttctcaattta 631

                                                                       
Query: 61  gcatcagcctcactcgctgacactccaaatgtaacggcaacttctcgcattaacactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gcatcagcctcactcgctgacactccaaatgtaacggcaacttctcgcattaacactgaa 571

                                                                       
Query: 121 agatcaccattttgtggtgtccatggtgttagtgttaaaacatcactcgataccaaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agatcaccattttgtggtgtccatggtgttagtgttaaaacatcactcgataccaaaagg 511

                                                                       
Query: 181 ccaattcccgatttagttcaggaggaaaaaaaatctggaccacctttcacaggcctgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccaattcccgatttagttcaggaggaaaaaaaatctggaccacctttcacaggcctgctt 451

                                                                       
Query: 241 gctctgctctgtcagttgctaatgggagccagaatctgtgggcagcagaaggcatggggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gctctgctctgtcagttgctaatgggagccagaatctgtgggcagcagaaggcatggggc 391

                                                                       
Query: 301 aagggcctggctacctggaagcagtaacttccagcaggtaagcaggaagctgtggggagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 390 aagggcctggctacctggaagcagtaacttccagcaggtaagcaggaagccgtggagagg 331

                                                                       
Query: 361 gaactcagactttatctagccgcccttcatgtcagtcacgtgtcaatgggggagattcct 420
           ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 330 gaactcagactttatctagccgcccctcatgtcagtcacgtgtcaatgtgggagatccct 271

                                                                       
Query: 421 ccactaggctcctcatctgtaaagtgggaactccatacacctgcctgggatggagcttgc 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccactaggctcttcatctgtaaagtgggaactccatacacctgcctgggatggagcttgc 211

                     
Query: 481 tggtagagaa 490
           ||||||||||
Sbjct: 210 tggtagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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