BAC Information

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BAC

Clone NameMSMg01-546G10
Chromosome2 (Build37)
Map Location 128,253,564 - 128,254,078
singlet/doubletsinglet
Overlap geneLOC100043424
Upstream geneA530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043729
Downstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546G10.T7 (MSMg01no546_g10.b1)MSMg01-546G10.TJ (MSMg01no546_g10.g1)
ACCAG611235AG611236
length723732
length of high quality
(start - end)
679 (45 - 723)515 (70 - 584)
definitionCHROMAT_FILE: MSMg01no546_g10.b1 PHD_FILE: MSMg01no546_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:41 2005CHROMAT_FILE: MSMg01no546_g10.g1 PHD_FILE: MSMg01no546_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAATCTTTCGAAATAATTCATAAGCAGTTTCCTCAGTCCATAAT
TTACCATTATATGGATGATATTTTGCTGGCTGATTCAAAGAGAGATACCT
TAGAAAATATGTTTGATGAAATAGAGAATTTTGCCTTGTTGGGGATTACA
AATTGCTCCTGAAAAAAAAAATACAAAGAGGAGATTCTATTAATTTTCTA
GGACATAAGTCTACAAAAATTCAACCACAAAAAATACAAACCAGGAGAGA
CCAATTAAGAACTCTTAATGATTTTCAGAAATTGCTGAAATATTAACTGG
CTATGGCCTACAATTGGATTGACTACTTAAAAGCTAAGTAATTTATTTCA
AACCTTATGAGGTAATAAAGACTTAAATAGTCAAAGAAAATTGTCAGCTG
GAAAGAAGTTGGTTCTAGTAGAAAAGAAACTGTAGGCTAGACATATAGAT
TGTATTGATCCAAAGATGGCTTGTATTTTAGTTATCTTGCCTTCTAATCA
TTCTCCCACAGGAATTCTTAAGCAAAGTGAAGATTATATCTTAGAATAAA
TATTTTTAGCACACAGAGTAAAAAAAAAAAATATATTAGAAAGGGTTTCT
AAATTGTTTCTGAAAGGAAAAACAAGGCTCATCAGTTAGCAGGAATAGAC
CCAGCAGAAATTGTGGTTCCTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCTCAAAGGTATTTGGAGGCTTTCTTTCTC
TGAAGCTTGCACTCTGATTTATTTAAGCCAAGTTAGTGCCTGCCTCTTGT
GGAAGCCAGCTTCAAAATTCATATCTCACCCGATTCTCCCAATCATAAGG
GTGTGAACTATTTCAAAGGGTGGGGTGCGACTGCGGCTCTAGACTACCCT
GGTCCTTCCTGCACCCCAGAGTTCGTTTAACAAACTCTGTGCTCGGTCAG
GGGCAGGACCCAAAATGATTGTCATCAGCCCAGGCATGCTGAAGAAGCCG
AACACAGTATTCCTGACAAGGAGACAGCCAAGAGACCTCTCAGGTACATT
CCAGGAGAAAGCTGAACGTGTGTGACTATCCTCTTCACAGAGGGCCAGGC
AATGCTGATATCATGCAAAGACCCAAGCCGGCAAACTCCTGTTATGCTCA
GAGTGAATGGAGCTGCTCTCAGGGCTCATTCAGTTAGGTTGCTGACTCAT
TCTTAACCCGGGAAGCCCCACACGCCCCAGTGAGTTGCTCAGAACAGGCT
CCTGTCTTCCCTGCAGCCTGCTATGCAGCTTTTTAAGCAAATGACCGCTT
TTTAGATTTGCTTCTAAAGTGGCACAGCAGTTACTGCAACTGTTTATTTG
ACAGTAAAGATTTTTGTAAGAATAGCAGTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_g10.g1 MSMg01no546_g10.g1 CHROMAT_FILE:
MSMg01no546_g10.g1 PHD_FILE: MSMg01no546_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:41 2005
         (515 letters)



>mm_chr2_128253364_128254278
          Length = 915

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcaaaggtatttggaggctttctttctctgaagcttgcactctgatttatttaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcaaaggtatttggaggctttctttctctgaagcttgcactctgatttatttaagcc 260

                                                                       
Query: 61  aagttagtgcctgcctcttgtggaagccagcttcaaaattcatatctcacccgattctcc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aagttagtgcctgcctcttgtggaagccagcttcaaaattcatgtctcacccgattctcc 320

                                                                       
Query: 121 caatcataagggtgtgaactatttcaaagggtggggtgcgactgcggctctagactaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcataagggtgtgaactatttcaaagggtggggtgcgactgcggctctagactaccc 380

                                                                       
Query: 181 tggtccttcctgcaccccagagttcgtttaacaaactctgtgctcggtcaggggcaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtccttcctgcaccccagagttcgtttaacaaactctgtgctcggtcaggggcaggac 440

                                                                       
Query: 241 ccaaaatgattgtcatcagcccaggcatgctgaagaagccgaacacagtattcctgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaaatgattgtcatcagcccaggcatgctgaagaagccgaacacagtattcctgacaa 500

                                                                       
Query: 301 ggagacagccaagagacctctcaggtacattccaggagaaagctgaacgtgtgtgactat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagacagccaagagacctctcaggtacattccaggagaaagctgaacgtgtgtgactat 560

                                                                       
Query: 361 cctcttcacagagggccaggcaatgctgatatcatgcaaagacccaagccggcaaactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 cctcttcacagagggccaggcaatgctgatatcatgcaaagacccgagccggcaaactcc 620

                                                                       
Query: 421 tgttatgctcagagtgaatggagctgctctcagggctcattcagttaggttgctgactca 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttacgctcagagtgaatggagctgctctcagggctcattcagttaggttgctgactca 680

                                              
Query: 481 ttcttaacccgggaagccccacacgccccagtgag 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttaacccgggaagccccacacgccccagtgag 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)