Query= MSMg01no546_n05.b1 MSMg01no546_n05.b1 CHROMAT_FILE:
MSMg01no546_n05.b1 PHD_FILE: MSMg01no546_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:14 2005
(169 letters)
>mm_chr2_38589366_38589933
Length = 568
Score = 310 bits (160), Expect = 4e-89
Identities = 163/164 (99%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 6 ggaattcaaaagccctgactctttcttattagttactttngggagagtcacctcttcttt 65
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 ggaattcaaaagccctgactctttcttattagttacttt-gggagagtcacctcttcttt 310
Query: 66 accctaatacagacgtatatggttcatctcacaagttatcaggaaaataagaatgcctat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 accctaatacagacgtatatggttcatctcacaagttatcaggaaaataagaatgcctat 250
Query: 126 gaaaaggcctttatgtcaggagcacagtcagtggctgctctaag 169
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaaaaggcctttatgtcaggagcacagtcagtggctgctctaag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 568
Length adjustment: 8
Effective length of query: 161
Effective length of database: 560
Effective search space: 90160
Effective search space used: 90160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no546_n05.g1 MSMg01no546_n05.g1 CHROMAT_FILE:
MSMg01no546_n05.g1 PHD_FILE: MSMg01no546_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:15 2005
(604 letters)
>mm_chr2_38428540_38429543
Length = 1004
Score = 1133 bits (586), Expect = 0.0
Identities = 595/598 (99%)
Strand = Plus / Plus
Query: 5 tggaccaaactgcgttctgatcctcgctttccattgtccagatgggagaaccagctgcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tggaccaaactgcgttctgatcctcgctttccattgtccagatgggagaaccagctgcca 264
Query: 65 agcatgaggtctcactgatgaggaaccaagaccgaaacatcttggcctttggctagagag 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 agcatgaggtctcactgatgaggaaccaagaacgaaacatcttggcctttggctagagag 324
Query: 125 tggtcagagcaggtcacacacacagctctgcctgccatccatgctggagcccaggcttcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtcagagcaggtcacacacacagctctgcctgccatccatgctggagcccaggcttcg 384
Query: 185 gccccaccccgtggacgatgccacagtgggttttcaaggtgtgtgacagaagcaccacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccccaccccgtggacgatgccacagtgggttttcaaggtgtgtgacagaagcaccacct 444
Query: 245 ggggaagggcagcttgcagagacaccagactcttatgtgaagtctgcctttttcatgtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggggaagggcagcttgcagagacaccagactcttatgtgaagtctgcctttttcatgtct 504
Query: 305 aatgtttcagacaggtgagccgggtcacttgtgtgttttgacaagagtcatgcgtgttgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgtttcagacaggtgagccgggtcacttgtgtgttttgacaagagtcatgcgtgttgt 564
Query: 365 gggaggactctttggttggccttccactttgaggcctatgttctgtggcttctgccagtt 424
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 565 gggaggactctttggttggccttccactttgaggcccatggtctgtggcttctgccagtt 624
Query: 425 ttgcaatcctcgtttctgggataaagacctgggtaggccatgctgggtgactcctctttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgcaatcctcgtttctgggataaagacctgggtaggccatgctgggtgactcctctttc 684
Query: 485 ttctgcactgcctgaccccctgccctgaggagggacttagaccaggcagggccagctctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctgcactgcctgaccccctgccctgaggagggacttagaccaggcagggccagctctg 744
Query: 545 tgcacctgtgaaactgcttggtgcaagatggacagtgtctgctggattggaaccactg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgcacctgtgaaactgcttggtgcaagatggacagtgtctgctggattggaaccactg 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
