Query= MSMg01no546_n16.b1 MSMg01no546_n16.b1 CHROMAT_FILE:
MSMg01no546_n16.b1 PHD_FILE: MSMg01no546_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:17 2005
(545 letters)
>mm_chr2_136860004_136860948
Length = 945
Score = 1015 bits (525), Expect = 0.0
Identities = 537/541 (99%)
Strand = Plus / Plus
Query: 5 gaattcactagatgacattctgctgcacatctgagattacaggtgtatgctaccatgacc 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagatgacattccgctgcacatctgagattacaggtgtatgctaccatgacc 264
Query: 65 aacaacattaagttttcattttagtacagttgaaaaaaaaatgttgcatggttctttctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaacattaagttttcattttagtacagttgaaaaaaaaatgttgcatggttctttctt 324
Query: 125 tttaaagcaaaacaaaacaagtgtcaagcttccttctggcattgcggtgtgtgctttcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaaagcaaaacaaaacaagtgtcaagcttccttctggcattgcggtgtgtgctttcat 384
Query: 185 ggatccactcttccccttcctcccttccttgcaaagctgctgttccactgtacatattct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggatccactcttccccttcctcccttccttgcaaagctgctgttccactgtacatattct 444
Query: 245 ggtcaggcgagctctgttagctcctatgtctgtcttcctggaacccttcttcttcatggt 304
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ggtcaggcgagctctgttagctcctatgtctgtcttcctggaacccttccccttcatggt 504
Query: 305 cctttttctatgctcatcgtagtcaccccacataaacacacaaatgtaaaaagtagaagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctttttctatgctcatcgtagtcaccccacataaacacacaaatgtaaaaagtagaagc 564
Query: 365 taggatgcatatatctttaatgtcagggctttagaaaggattcaaaaagacaaatcacac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taggatgcatatatctttaatgtcagggctttagaaaggattcaaaaagacaaatcacac 624
Query: 425 atagatatgcatgccctgcacatgaattaatttaggctagaataaatacctaaatcaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atagatatgcatgccctgcacatgaattaatttaggctagaataaatacctaaatcaaag 684
Query: 485 ctgaatactgcctacttgagcatttggaactggccagctttccttaggcactgtcaaaga 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgaatactgcctacctgagcatttggaactggccagctttccttaggcactgtcaaaga 744
Query: 545 c 545
|
Sbjct: 745 c 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_n16.g1 MSMg01no546_n16.g1 CHROMAT_FILE:
MSMg01no546_n16.g1 PHD_FILE: MSMg01no546_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:17 2005
(665 letters)
>mm_chr2_137027424_137028491
Length = 1068
Score = 909 bits (470), Expect = 0.0
Identities = 521/542 (96%), Gaps = 10/542 (1%)
Strand = Plus / Minus
Query: 132 gctcataatactgaactcatttgctgtctagagttttggttgccccttgtcaaccagaag 191
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1068 gctcataatactgaactcatttgctgtctagagttttggttgcctcttgtcaaccagaag 1009
Query: 192 cactggcagagagctcagaggatgggaagtagagacttactagcatgactggttcacata 251
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1008 cactggcagagagctcagaggatgggaagcagagacctactagcatgactggttcacatg 949
Query: 252 cctcctctctccaccagcttcactcaccactgcttcacacacacacatacacaccagca- 310
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 948 cctcctctctccaccagcttcactcaccactgctt--cacacacacatacacacccgcac 891
Query: 311 ----cacacacacacacacacagctctaagcacaagacactttagggaattccacactgc 366
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 cccccccacacacacacacacagctctaagcacaagacactttagggaattccacactgc 831
Query: 367 cttggctccctcctgactttctgcggttgtccctgggtctctccccactctcttggcttc 426
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 830 cttggctccctcctgactttctgcagttgtccctgggtctctccccactctcttggcttc 771
Query: 427 ccaatcccttctttgagatgctggccttcattaatatctatgccatctagcccttgagtt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ccaatcccttctttgagatgctggccttcattaatatctatgccatctagcccttgagtt 711
Query: 487 ttcagtttcctgcatgaactacagcttctaccgagaat--aaaaaaaaaatgatttcaga 544
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 710 ttcagtttcctgcatgaactacagcttctaccgagaataaaaaaaaaaaatgatttcaga 651
Query: 545 gtttgtttggtgagacttcctgatcaattggatgaaacatgggaagttgagagaaagac- 603
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtttgcttggtgagacttcctgatcaattggatgaaacatgggaagttgagagaaagaca 591
Query: 604 aaaatctccccaacctctgactagaactgtaaagcaaagttagcaatatcagccaaagcc 663
||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 590 aaaatctccccgacctctgactagaactgtaaagcagagttggcaatatcagccaaagcc 531
Query: 664 ag 665
||
Sbjct: 530 ag 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space: 692990
Effective search space used: 692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
