Query= MSMg01no546_n18.b1 MSMg01no546_n18.b1 CHROMAT_FILE:
MSMg01no546_n18.b1 PHD_FILE: MSMg01no546_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:18 2005
(663 letters)
>mm_chr2_103921678_103922744
Length = 1067
Score = 996 bits (515), Expect = 0.0
Identities = 600/663 (90%), Gaps = 55/663 (8%)
Strand = Plus / Minus
Query: 5 gaattcacatgctcttcaatgtg----cctcctctgccccaaggaacccaacactttgaa 60
||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct: 624 gaattcacatgctcttcaatgtgccctcctcctctgccccatggaatccaacactttgaa 565
Query: 61 cagaaagcctagattttcagctacacaccaggaatttacatagaaatcatcagatactcc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cataaagcctagattttcagctacacaccaggaatttacatagaaatcatcagatactcc 505
Query: 121 tatttttaaaacaattttctctactggtcctcacttaactgaaaggtttctcctttctac 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 tatttttaaaacaattttctctactggtccttacttaactgaaaggtttctcctttctac 445
Query: 181 catggaagacagcttttatggttatctcttaggaagggtttggtctcatattgcagacta 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgtggaagacagcttttatggttatctcttaggaagggtttggtctcatattgcagacta 385
Query: 241 cactgaaatggtcatctctccttgtatcattaatcattaacatgtatatcttagagctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cactgaaatggtcatctctccttgtatcattaatcattaacatgtatatcttagagctat 325
Query: 301 aaccactaaaaacaaagggcacagctgctggcttcttccctgtctaccatttgctaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaccactaaaaacaaagggcacagctgctggcttcttccctgtctaccatttgctaagtt 265
Query: 361 cttacatggagattccaagtccagctgacttgtgaagcagatgatatggattgtgcatat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttacatggagattccaagtccagctgacttgtgaagcagatgatatggattgtgcata- 206
Query: 421 ggaatgaatcaaaatttattgtatgaaaagaattcaaaagagagagagacagagactcct 480
|||| ||||||
Sbjct: 205 ---------------ttat-----------------------------------actcct 196
Query: 481 tctcttctcaaaaaggccttgctctctgaggccactgtcctaggcatctgcagtgtggct 540
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctcttctcaaaaaggcctcactctctgaggccactgtcctaggcatctgcagtgtggct 136
Query: 541 ttgcaaatgactaattttccttattagtcatgtgacatttagtatcctctgagctcatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ttgcaaatgactaattttccttattagtcatgtgacatttagtatcctctgagctcatct 76
Query: 601 caggtcccctcaggactccatgtatactagataggtgacagatttataaacagtcatttg 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 75 caggtcccctcaggactccatgtgtactagataggtgacagatttataaacagtcatttg 16
Query: 661 aaa 663
|||
Sbjct: 15 aaa 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1067
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1057
Effective search space: 690221
Effective search space used: 690221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_n18.g1 MSMg01no546_n18.g1 CHROMAT_FILE:
MSMg01no546_n18.g1 PHD_FILE: MSMg01no546_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:18 2005
(643 letters)
>mm_chr2_103828153_103829195
Length = 1043
Score = 497 bits (257), Expect = e-144
Identities = 266/269 (98%), Gaps = 2/269 (0%)
Strand = Plus / Plus
Query: 209 cacttgggaggcagaggcaggcagatttctgagttcaagtcctaccaatgcttgctgcca 268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cacttgggaggcagaggcaggcagatttctgagttcaagtcctaccaatgcttgctgcc- 207
Query: 269 ccaccacacgtagtgactatggtatctttaggaggattcgtttagtgccaatttctcagg 328
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 208 ccaccacacgtagtgactatggtatctttaggaggattcgtttagtgccagtttctcagg 267
Query: 329 ctatttcttataaaatgaacttgctaaaattctcatatttcctttgtaattaggatccga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctatttcttataaaatgaacttgctaaaattctcatatttcctttgtaattaggatccga 327
Query: 389 atttca-ttatttgactggggaaatgtgtgtattaaggcaagatcacctctgcttgtgtg 447
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atttcaattatttgactggggaaatgtgtgtattaaggcaagatcacctctgcttgtgtg 387
Query: 448 tcttagaactgacttaaaacgacgtttca 476
|||||||||||||||||||||||||||||
Sbjct: 388 tcttagaactgacttaaaacgacgtttca 416
Score = 342 bits (177), Expect = 4e-98
Identities = 180/181 (99%)
Strand = Plus / Plus
Query: 463 aaaacgacgtttcaaagcactagatgaggctgctctctaccagtggctatgaattaattc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaaacgacgtttcaaagcactagatgaggctgctctctaccagtggctatgaattaattc 722
Query: 523 ttcattaattaaaaaaatcattcctacaagcaaatagaatctttgaatctcaatcaagtt 582
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 723 ttcattaattaaaaaaatcattcctacaagcaaatagaatctttgaagctcaatcaagtt 782
Query: 583 aattttcattgtcgaattgtgatgcctttgaacttggcttattgaattagcctattggat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aattttcattgtcgaattgtgatgcctttgaacttggcttattgaattagcctattggat 842
Query: 643 g 643
|
Sbjct: 843 g 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
