Query= MSMg01no546_o11.b1 MSMg01no546_o11.b1 CHROMAT_FILE:
MSMg01no546_o11.b1 PHD_FILE: MSMg01no546_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(693 letters)
>mm_chr2_12896162_12897255
Length = 1094
Score = 1268 bits (656), Expect = 0.0
Identities = 685/700 (97%), Gaps = 11/700 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcacttgagtttacctaatctaggcaatccttcagatatatgcccaaaagctt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattctcacttgagtttacctaatctaggcaatccttcagatatatgcccaaaagctt 255
Query: 64 gacccttccatgattccagatctccaagttgaagattaactaccataggctgtgggttct 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaccctttcatgattccagatctccaagttgaagattaactaccataggctgtgggttct 315
Query: 124 ggctgggctgttataataattgcagactatcctttcacacatgacgcagatttcacagtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggctgggctgttataataattgcagactatcctttcacacatgacgcagatttcacagtt 375
Query: 184 gatgtgggacaaaacttttgtcaaatgtgttgatagttcccgctatccttgtctaatatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatgtgggacaaaacttttgtcaaatgtgttgatagttcccgctatccttgtctaatatg 435
Query: 244 ggttcaatactgaaccttctgtgggaagctctggaaaatgctggaagcctccttttgtgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggttcaatactgaaccttctgtgggaagctctggaaaatgctggaagcctccttttgtgt 495
Query: 304 cagtggtcattccctctgcacagatgggcactggcactctcatccattgtctttgctggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagtggtcattccctctgcacagatgggcactggcactctcatccattgtctttgctggt 555
Query: 364 tctacagttgtacatccttatgatgaaggagcatgaaaaccctcttcctgtgtagggaaa 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctacagttgtgcatccttatgatgaaggagcatgaaaaccctcttcctgtgtagggaaa 615
Query: 424 gtgaattccagatggagcacaggaaaaaaagggc---------acactgaaaccacaaat 474
||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 616 gtgaattccagatggagcacaggaaaaaa-gggcttcctagccacactgaaaccacaaat 674
Query: 475 tccagatctttgtcttgctccattcaaagatatattctcccttaaaagggtgctggctgc 534
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 675 tccagatctttgtcttgctccattcaaagatacattctcccttgaaagggtgctggctgc 734
Query: 535 tttttgttccttaatcttttcttatgctctaagtgtgtgttacatcgtatgtgatcacag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tttttgttccttaatcttttcttatgctctaagtgtgtgttacatcgtatgtgatcacag 794
Query: 595 aagagccagccaactgtgtctgagagcattagaggagtgtcccaggagggatgacatttc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aagagccagccaactgtgtctgagagcattagaggagtgtcccaggagggatgacatttc 854
Query: 655 ttaaataattttttttt-acaaaggctcacagcttgtaag 693
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 855 ttaaataattttttttttacaaaggctcacagcttgtaag 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space: 740372
Effective search space used: 740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o11.g1 MSMg01no546_o11.g1 CHROMAT_FILE:
MSMg01no546_o11.g1 PHD_FILE: MSMg01no546_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(398 letters)
>mm_chr2_13097550_13098347
Length = 798
Score = 762 bits (394), Expect = 0.0
Identities = 397/398 (99%)
Strand = Plus / Minus
Query: 1 agtacagagcaaggggcatcttccagctgccgtgataccttgaggggttctttcatgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agtacagagcaaggggcatcttccagctgccgtgataccttgaggggttctttcatgagc 539
Query: 61 acagttgcctgggctggggcagatgtgggagcataatgatggagtacctacctagtcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acagttgcctgggctggggcagatgtgggagcataatgatggagtacctacctagtcagc 479
Query: 121 catgctttttcacgttagccttgttagaccgtggtcttagatttttatgagtgaggggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 catgctttttcacgttagccttgttagaccgtggtcttagatttttatgagtgaggggga 419
Query: 181 acccgactttccaagtacattaatttaaatgctctccatggtatcattgtgaaattgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acccgactttccaagtacattaatttaaatgctctccatggtatcattgtgaaattgggg 359
Query: 241 agggaggaaatgccattttcatgacatgaaaaatttgcccagctcttcccgaccccctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agggaggaaatgccattttcatgacatgaaaaatttgcccagctcttcccgaccccctcc 299
Query: 301 ccacaccctcgcttgctatgtgataaacggtgctcccggtcatacgcgacaggatcttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccacaccctcgcttgctatgtgataaacggtgctcccggtcatacgcgacaggatcttga 239
Query: 361 gtcctcatgaagaattttcacagtgtgattacgggaaa 398
||||||| ||||||||||||||||||||||||||||||
Sbjct: 238 gtcctcaggaagaattttcacagtgtgattacgggaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
