XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTATG
GAATTTAGATTTAAGAACTTGATTTTTTTATATATATATTATTTTTAAAT
AAATGGTTGCCCATTAAATGGATATCATCCCAGATAACATCCCAGATATG
TGGAACAAAGTTGCAGACTCTTGTTGGAGTAGAAGAATTGAATGTAGATA
GGCTGATAACAGTGATAAAAATTGAGGTCAGACTTAGAGATACAAAGAAA
TAATAAGGAAGGGAGGCCAGGCAGAACAAGAAGACAAAGAAGATTTAAAA
GAATGATGGAGGTAACATCCATCAGAGGAAAATATGAAGAGATTCTCTAT
TCCTATGCTGGACAGACCTTATTTCAGGAAAAGTCTGGTAGCCAGGTGGA
CATGAAAACATTTCAAACGTATTTTCATATGTTACTTTTGGCACTGGGAT
CAAAATAGATTTATGAACATGATGCTCAATACTTCCTGATAGTCAGGATT
CTTTGGTAGATGAAAGATCTGAACAAACCATTTAAACATGCTTTTCCTTT
ATATAAGGAAGCACTGGGTTCTGCTATTCTCTAAAGCTTTAATCCAGATT
GCTTATGATCATGACCTATAACTTCATCATGCAAAATAAATCAGAAAATC
CATTTGCCTGCTACTAGGATTGCAGCACAAGATTTTCTTTTTTCAGAATG
TTTATTCAAAATATTTATTTTGGATTTTTCTTTTATTCAAATGTTGTATT
GA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCGAGGGCCAGCAGAAAGAATGGAAATAGGCAACTTTGGGTG
GTAGGATATTAGGAGCACCTTCCAGAATGTACCAGAGACCTGGGAGATGA
GAGATTTGCAGGACTCAAAAGGAGGGACTTTAGATGAAATATCCTAAAGT
GGGGAGTGGGAACTTGTCGAGCCCACCTCCAGCAGAGAGTCAGGGCATCA
AGTCAGGGACAAGGTTGCTATGCCACAGTCAAAATCTGAACCATAATTGT
TCCTGTCTAAAAGAATAGTAGGGATGGAAATGGAGAGGAGCCTGAGGACA
AGGAAGTCCAGTGACAGGCCCAAATCCAGATCAATGGGAGGCCCCAAGGT
CTGACACTATTATTGCGGATATGGAGTGCTCATAAAAAGGGACCTATCAT
GACTGCACTCTGGAAGACCCAACAAGCAGCTAAAAGAGTCATATGCAGAT
ATTTGCACCCAACCAATCCAATCGACAGAAGCTGCTAACCTCTGTGGTTG
AATAAGGGGATAGCTGGAAGAAGCTGAGGAGGAGGGTTACTCTATAGGAG
GACCAGCAGTCTCAATAACCTGAACCCCTAAGATCTCTCAGGCACTGGAC
CACCAACCAGGCAGCATACACCAACTGATATGANGCCCCAACACATATAG
AGCAGAGGACTGCANGGTCTGGGTTCAGTCAGAGAACATGCACCTAACTC
TCT

Query= MSMg01no547_f03.b1 MSMg01no547_f03.b1 CHROMAT_FILE:
MSMg01no547_f03.b1 PHD_FILE: MSMg01no547_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:55 2005
         (700 letters)



>mm_chr2_96165877_96166976
          Length = 1100

 Score = 1301 bits (673), Expect = 0.0
 Identities = 691/697 (99%), Gaps = 1/697 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttatggaatttagatttaagaacttga-tttttttatatatatattattttt 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 968 gaattcagttatggaatttagatttaagaacttgattttttttatatatatattattttt 909

                                                                       
Query: 64  aaataaatggttgcccattaaatggatatcatcccagataacatcccagatatgtggaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 aaataaatggttgcccattaaatggatatcatcccagataacatcccagatatgtggaac 849

                                                                       
Query: 124 aaagttgcagactcttgttggagtagaagaattgaatgtagataggctgataacagtgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaagttgcagactcttgttggagtagaagaattgaatgtagataggctgataacagtgat 789

                                                                       
Query: 184 aaaaattgaggtcagacttagagatacaaagaaataataaggaagggaggccaggcagaa 243
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 788 aaaacttgaggtcagacttagagatacaaagacataataaggaagggaggccaggcagaa 729

                                                                       
Query: 244 caagaagacaaagaagatttaaaagaatgatggaggtaacatccatcagaggaaaatatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 caagaagacaaagaagatttaaaagaatgatggaggtaacatccatcagaggaaaatatg 669

                                                                       
Query: 304 aagagattctctattcctatgctggacagaccttatttcaggaaaagtctggtagccagg 363
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 668 aagagattctctattcctatgctggacagaccttatttcaggaaaattctggtagccagg 609

                                                                       
Query: 364 tggacatgaaaacatttcaaacgtattttcatatgttacttttggcactgggatcaaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tggacatgaaaacatttcaaacgtattttcatatgttacttttggcactgggatcaaaat 549

                                                                       
Query: 424 agatttatgaacatgatgctcaatacttcctgatagtcaggattctttggtagatgaaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agatttatgaacatgatgctcaatacttcctgatagtcaggattctttggtagatgaaag 489

                                                                       
Query: 484 atctgaacaaaccatttaaacatgcttttcctttatataaggaagcactgggttctgcta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atctgaacaaaccatttaaacatgcttttcctttatataaggaagcactgggttctgcta 429

                                                                       
Query: 544 ttctctaaagctttaatccagattgcttatgatcatgacctataacttcatcatgcaaaa 603
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 428 ttctctaaagctttaatccagattgcttatgatcatgacctataacttcaccatgcaaaa 369

                                                                       
Query: 604 taaatcagaaaatccatttgcctgctactaggattgcagcacaagattttcttttttcag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taaatcagaaaatccatttgcctgctactaggattgcagcacaagattttcttttttcag 309

                                                
Query: 664 aatgtttattcaaaatatttattttggatttttcttt 700
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 308 aatgtttattcaaaatatttattttgtatttttcttt 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)