BAC Information

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BAC

Clone NameMSMg01-547K01
Chromosome2 (Build37)
Map Location 111,073,796 - 111,074,446
singlet/doubletsinglet
Overlap genenone
Upstream geneBbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275
Downstream geneOlfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547K01.T7 (MSMg01no547_k01.b1)MSMg01-547K01.TJ (MSMg01no547_k01.g1)
ACCAG612170AG612171
length748756
length of high quality
(start - end)		622 (26 - 647)651 (61 - 711)
definitionCHROMAT_FILE: MSMg01no547_k01.b1 PHD_FILE: MSMg01no547_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:18 2005CHROMAT_FILE: MSMg01no547_k01.g1 PHD_FILE: MSMg01no547_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGATCCGCGGAATTCTTAATC
ATCAGGCAGTAGCAGTACTTGAGAATTAGAAGAGGTAGTTTTGTTAGACA
AAGTGTGTAACTGGAGGTTGGCTTTGAACTTTTAAAAGCTCAATCCAGGT
CTACTTCTTGCTGCCTGAGTATCTATATGTAGAACTCTCAGCTACAGTAC
CATGTCTGCCTGCCTGCCTAACGAAAGCTCCTGAGGTCACGTTTGTCATG
TGTCGGGGGTGTTCTTGCATGGTCCACCTTTTCCCCCTTAAAGAGAGTGA
ACGAAACTTCTGAAACTGTAAGAAAGCTTTAGTTAAATGCTTTCCTTCAT
AAGAGTTGCTATGGTTATGGTGTCTTTTCACAGCAATAGAATATTCACTA
AGACCAATGTTGGCACCAGGGACGGGGATATTGCTGTGACAGGTCTGACC
ATGTTGTTTGTTAGAGGAATATGAAAGACTTTGTGACTTTGGACTAGAAA
AGCAGTTGGATATTTTGAGTAGGGATTCATGATCCATTGTAGTAGGAACA
TAGAAGATAGTGATGACTTGACCGTGGAGGCCCAGCTCCAGAAGTTTCAT
GGTTGAAGAAGTAGCCTATAGACTGTTTTTGTGATACTTTGGTGAAGAAT
GTGGATAAAATTCTGCCCTTTTCAAAAATGTGCCTTAGGCTAAATTTAAG
TGTTTTGCATCAATGGCATTGGCAAATGGATTTCAATATAGCTTAGTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACATAAAGAACATTCTCAGAAGAAAATTTATCACTAATAT
TAAATTCAAAATTATGACCAATATATTGTTAGATTTTTCTAAAATATAAA
CATCATTTAGTTAGCTGATACTAATAACAAAGTAGATGAAAATCAAACAG
TAGAGGTGAGACATGGACATGGAACAGAAAGAAACAGGAGAAAATGGAAC
AGAACGAGAAGGAACGCTATAAACTCTAAAGGAGAAGCAGGTGAGAAGCA
CACAAGGGGAATATTTTCTGATGCTTTTCTGTCCCACTCATTGCTTAAAA
TCTCAAGTAAATTCTGATTGCAGAAAATTTCAATAAAGCAGTAAAACGCT
TGTGATCCTTCTTCTGCCTATCTCCCCAGCTTCTGTTCTGTCCTTCATAA
AACTCTTTGTTCTTCCATCACTGTAGCTATGTTTCATTATTTTATTGAAA
AGAAAGAATGTCTTAATGTTTTTATTTAATTTGTTACTTCTTACAGCAAA
AAAATTCTCTCCTATGTCAATTCATTAAGAAGACCTTTCTACTTAATTCT
GAATTTGATAGCTTTTCTCTATGCCCTAATACCAGACCTGCAAACATGTT
ATATTGCAATTCCTTTATATTATTTACCATGACTATTCTCTCAAAATTTT
ACCAATTTCGGGGACTTCTGAAAATCAGAGTGTATGTTATTAATAAATCC
TGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_k01.g1 MSMg01no547_k01.g1 CHROMAT_FILE:
MSMg01no547_k01.g1 PHD_FILE: MSMg01no547_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:18 2005
         (651 letters)



>mm_chr2_111073596_111074646
          Length = 1051

 Score = 1228 bits (635), Expect = 0.0
 Identities = 647/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acataaagaacattctcagaagaaaatttatcactaatattaaattcaaaattatgacca 60
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acataaagaacattctcagaaggaaatttatcactaatattaaactcaaaattatgacca 260

                                                                       
Query: 61  atatattgttagatttttctaaaatataaacatcatttagttagctgatactaataacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatattgttagatttttctaaaatataaacatcatttagttagctgatactaataacaa 320

                                                                       
Query: 121 agtagatgaaaatcaaacagtagaggtgagacatggacatggaacagaaagaaacaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtagatgaaaatcaaacagtagaggtgagacatggacatggaacagaaagaaacaggag 380

                                                                       
Query: 181 aaaatggaacagaacgagaaggaacgctataaactctaaaggagaagcaggtgagaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatggaacagaacgagaaggaacgctataaactctaaaggagaagcaggtgagaagca 440

                                                                       
Query: 241 cacaaggggaatattttctgatgcttttctgtcccactcattgcttaaaatctcaagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaaggggaatattttctgatgcttttctgtcccactcattgcttaaaatctcaagtaa 500

                                                                       
Query: 301 attctgattgcagaaaatttcaataaagcagtaaaacgcttgtgatccttcttctgccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctgattgcagaaaatttcaataaagcagtaaaacgcttgtgatccttcttctgccta 560

                                                                       
Query: 361 tctccccagcttctgttctgtccttcataaaactctttgttcttccatcactgtagctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctccccagcttctgttctgtccttcataaaactctttgttcttccatcactgtagctat 620

                                                                       
Query: 421 gtttcattattttattgaaaagaaagaatgtcttaatgtttttatttaatttgttacttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttcattattttattgaaaagaaagaatgtcttaatgtttttatttaatttgttacttc 680

                                                                       
Query: 481 ttacagcaaaaaaattctctcctatgtcaattcattaagaagacctttctacttaattct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttacagcaaaaaaattctctcctatgtcaattcattaagaagacctttctacttaattct 740

                                                                       
Query: 541 gaatttgatagcttttctctatgccctaataccagacctgcaaacatgttatattgcaat 600
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattagatagcttttctttatgccctaataccagacctgcaaacatgttatattgcaat 800

                                                              
Query: 601 tcctttatattatttaccatgactattctctcaaaattttaccaatttcgg 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcctttatattatttaccatgactattctctcaaaattttaccaatttcgg 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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