BAC Information

Click to search

BAC

Clone NameMSMg01-547N12
Chromosome2 (Build37)
Map Location 180,881,759 - 181,052,069
singlet/doubletdoublet
Overlap geneEef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3
Upstream geneOsbpl2, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2
Downstream geneRtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547N12.T7 (MSMg01no547_n12.b1)MSMg01-547N12.TJ (MSMg01no547_n12.g1)
ACCAG612333AG612334
length754750
length of high quality
(start - end)		689 (32 - 720)607 (64 - 670)
definitionCHROMAT_FILE: MSMg01no547_n12.b1 PHD_FILE: MSMg01no547_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:35 2005CHROMAT_FILE: MSMg01no547_n12.g1 PHD_FILE: MSMg01no547_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,051,387 - 181,052,069)(180,881,759 - 180,882,365)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCAGATCAG
TATATAATTCTAATCTGTAATCTCTCCGCAAAACAGCTGCTCATGAACTT
TCTTTAGTTGAATTTGGTAAAAACTCAAGGCCTGCTCCCAAACATGGCAC
CATTCTGAGGCAAACATTTAATATGCCTATTGTACCTTTAGTATTTGTTC
TTACTGAGTGCCCAGCACTGTGCTAGGGACAAACAACACAGCTGGTCTGT
GGAGTTCAAACAAGGACAGAAGTTTATGAGGGAGTACGCCCAAGGTGAGA
TTATGGCACTGCAGTCCTATGATGCTTTTCTATCTGCAAGAGAAGACTGG
AAAGTTGGGAAGGTTACTTCTCTTCTCTTGATCTCAGCAATTGAGTTTAG
CCTCTGGAGGAGAGTCCATCTAAAGCACACTATAATACCCAGATGCAAGT
ACAGTAAGTAACTTATCTAGAGGACGTGGCTGCTTCCAAAGGGGTCAGCA
CCATTATTAGGAATAGATTTGTGTGCTTCTCCCTCCTTCCAGCTCCCTCC
CAAAGCAGAATTCCAATGTACACACAGAACTGTGTTTTCTCCATGTGAAT
GAGCTTGGTATTTCTACATTAAAAAGTACCACAAGTAAGCATCTCAAGAC
AGTATCTAGTACAATTTCCTCCATCTCTTGGAGTCTGGCACCATGGTTTC
ATCTTATACCCAAAATGTAGAAACTCAGGGAGGTCAGAAACTTCCCCTCC
AATN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCTCACCCTACCCAACCTTGATCTGCAATAACAAGA
ATAGGCCTTGAGAGGACAAGAGTGAGTGGAGAGTAGTCCTACCATCTGTC
CTGCCTGGCCACTGAAGTCATGGCATGTTCTGGGACAGGTGGGTCAATTC
CAGCCCATGTGACCTAAGTCACTGATCTCCTGGCTTCTGGGGCTGGTGTT
GCTGCAATTTAAGGATTGAGGATCTGGGCCAAGGAAAACTAGAATAGACA
TGGGGCTGGCTCATCAGGCAGGAGTGGGAGCAAGATGGGCTTCTGTCAGA
ATCCAGAAATCTAGGGGGAAGCAAGTGTGTGCCCACTCGTGGGGAGGAGC
TCTCAGGTTTCACGGTTCCTTGTGGGGCACATCAGGACACCCAGTCAGTT
TTGGTTCTACTCGGTCTTGCACATCTCACCGAGGCACCCAAAAAGGGTCA
TAGCCATGAAAGCCATTTGGCTTTTCCATCTTCACCTAGCTGGGGGTTCC
CAGCACCCACGCAGCGGGCCCCACCGCCTACCCATGAAGCATAGGAGGGC
AGTTTGCAAGGTCACCTGGCAGCGGTGAGAAGTGCCAGACTGAACACCTT
GGACGACGGGACTTTGAGAAACAGGGCCCCAGCAGTAGGCACACACGGCT
CTGGNGTCGCTCAGTTTATTGGGAAAACGAGCACTGAGCGTGTTGAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_n12.b1 MSMg01no547_n12.b1 CHROMAT_FILE:
MSMg01no547_n12.b1 PHD_FILE: MSMg01no547_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:35 2005
         (689 letters)



>mm_chr2_181051181_181052269
          Length = 1089

 Score = 1274 bits (659), Expect = 0.0
 Identities = 677/683 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcagatcagtatataattctaatctgtaatctctccgcaaaacagctgctcatgaa 66
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaattcagatcagtaaagaattctaatctgtaatctctccgcaaaacagctgctcatgaa 830

                                                                       
Query: 67  ctttctttagttgaatttggtaaaaactcaaggcctgctcccaaacatggcaccattctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ctttctttagttgaatttggtaaaaactcaaggcctgctcccaaacatggcaccattctg 770

                                                                       
Query: 127 aggcaaacatttaatatgcctattgtacctttagtatttgttcttactgagtgcccagca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aggcaaacatttaatatgcctattgtacctttagtatttgttcttactgagtgcccagca 710

                                                                       
Query: 187 ctgtgctagggacaaacaacacagctggtctgtggagttcaaacaaggacagaagtttat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctgtgctagggacaaacaacacagctggtctgtggagttcaaacaaggacagaagtttat 650

                                                                       
Query: 247 gagggagtacgcccaaggtgagattatggcactgcagtcctatgatgcttttctatctgc 306
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 649 gagggagtacgcccaaggtgagattatggcagttcagtcctatgatgcttttctatctgc 590

                                                                       
Query: 307 aagagaagactggaaagttgggaaggttacttctcttctcttgatctcagcaattgagtt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 589 aagagaagactggaaagttgggaaggttacttctcttctcttgatctcagcaactgagtt 530

                                                                       
Query: 367 tagcctctggaggagagtccatctaaagcacactataatacccagatgcaagtacagtaa 426
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 529 tagcctctggaggagagtccatctaaagcacactataatacccagatgcaggtacagtaa 470

                                                                       
Query: 427 gtaacttatctagaggacgtggctgcttccaaaggggtcagcaccattattaggaataga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtaacttatctagaggacgtggctgcttccaaaggggtcagcaccattattaggaataga 410

                                                                       
Query: 487 tttgtgtgcttctccctccttccagctccctcccaaagcagaattccaatgtacacacag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttgtgtgcttctccctccttccagctccctcccaaagcagaattccaatgtacacacag 350

                                                                       
Query: 547 aactgtgttttctccatgtgaatgagcttggtatttctacattaaaaagtaccacaagta 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aactgtgttttctccatgtgaatgagcttggtatttctacattaaaaagtaccacaagta 290

                                                                       
Query: 607 agcatctcaagacagtatctagtacaatttcctccatctcttggagtctggcaccatggt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agcatctcaagacagtatctagtacaatttcctccatctcttggagtctggcaccatggt 230

                                  
Query: 667 ttcatcttatacccaaaatgtag 689
           |||||||||||||||||||||||
Sbjct: 229 ttcatcttatacccaaaatgtag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_n12.g1 MSMg01no547_n12.g1 CHROMAT_FILE:
MSMg01no547_n12.g1 PHD_FILE: MSMg01no547_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:35 2005
         (607 letters)



>mm_chr2_180881559_180882565
          Length = 1007

 Score = 1151 bits (595), Expect = 0.0
 Identities = 604/607 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcaccctacccaaccttgatctgcaataacaagaataggccttgagaggacaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcaccctacccaaccttgatctgcaataacaagaataggccttgagaggacaagagt 260

                                                                       
Query: 61  gagtggagagtagtcctaccatctgtcctgcctggccactgaagtcatggcatgttctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtggagagtagtcctaccatctgtcctgcctggccactgaagtcatggcatgttctgg 320

                                                                       
Query: 121 gacaggtgggtcaattccagcccatgtgacctaagtcactgatctcctggcttctggggc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gacaggtgggtcaattccagcccatgtgacctaagtcactgacctcctggcttctggggc 380

                                                                       
Query: 181 tggtgttgctgcaatttaaggattgaggatctgggccaaggaaaactagaatagacatgg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tggtgttgctgcaatttaaggattgaggatctgggccaaggagaactagaatagacatgg 440

                                                                       
Query: 241 ggctggctcatcaggcaggagtgggagcaagatgggcttctgtcagaatccagaaatcta 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctggctcagcaggcaggagtgggagcaagatgggcttctgtcagaatccagaaatcta 500

                                                                       
Query: 301 gggggaagcaagtgtgtgcccactcgtggggaggagctctcaggtttcacggttccttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggggaagcaagtgtgtgcccactcgtggggaggagctctcaggtttcacggttccttgt 560

                                                                       
Query: 361 ggggcacatcaggacacccagtcagttttggttctactcggtcttgcacatctcaccgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggcacatcaggacacccagtcagttttggttctactcggtcttgcacatctcaccgag 620

                                                                       
Query: 421 gcacccaaaaagggtcatagccatgaaagccatttggcttttccatcttcacctagctgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacccaaaaagggtcatagccatgaaagccatttggcttttccatcttcacctagctgg 680

                                                                       
Query: 481 gggttcccagcacccacgcagcgggccccaccgcctacccatgaagcataggagggcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggttcccagcacccacgcagcgggccccaccgcctacccatgaagcataggagggcagt 740

                                                                       
Query: 541 ttgcaaggtcacctggcagcggtgagaagtgccagactgaacaccttggacgacgggact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcaaggtcacctggcagcggtgagaagtgccagactgaacaccttggacgacgggact 800

                  
Query: 601 ttgagaa 607
           |||||||
Sbjct: 801 ttgagaa 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |