BAC Information

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BAC

Clone NameMSMg01-547P07
Chromosome2 (Build37)
Map Location 158,782,087 - 158,938,168
singlet/doubletdoublet
Overlap genenone
Upstream gene2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547P07.T7 (MSMg01no547_p07.b1)MSMg01-547P07.TJ (MSMg01no547_p07.g1)
ACCAG612419AG612420
length725723
length of high quality
(start - end)		683 (41 - 723)520 (71 - 590)
definitionCHROMAT_FILE: MSMg01no547_p07.b1 PHD_FILE: MSMg01no547_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:44 2005CHROMAT_FILE: MSMg01no547_p07.g1 PHD_FILE: MSMg01no547_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,937,573 - 158,938,168)(158,782,087 - 158,782,604)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTTCCCATGGCTCTACAAGTAATCTCACTAACTCCACAAGATTACTTAC
TTCTGGATGCCTTTGCTCACTATGTCAAGTCCCCCATGCTAACATAAGCT
TGATCTCAAATCACTAGATATAATTTCACAAGTTTCCATAAAAATATTCT
TCCTCCCTTCTTACCTCCCTCCCTACTCAGAAGATGAGGACCACATCTGG
TTTTGTTAGACCCTAGTGCCTCAAACACAGACAGTCTGGCTCATAGTGTG
TGTTTAAGATGCATTTGGTGATCAGATTTGGATGGCAAAGAGATAAAATA
CTTTAAAGCAAAGTTGGTCAATGGTCTTCCTTTTCCTAAGAGGAAAAAGG
AATACCAAGAAACTGAGGTTGACTTTCCCTTCACCTTCATTTCATAGGAG
TCAACTGCCCATTGGTGGGTCACAAATCTAGACAGGCGCTATGAAAACAT
CTTCACCCTGAAGTATGCCCCATTGGACTTTGAGAAACCACAGATGCTGC
TATAAATACCAGAGGAAATCAAAGTTTGGAGTCTAAGGTGAAGAGAAGTT
TGGGTAAGATGATTTTGTAAAATACTTCAGGAAAGTATGCAGATATAGCC
GAGCTTTGGAAAGACCTTGAGGTCAGAAGCTCTGTTTCACCAAAAGATCA
AATATCCTGTGCCTGCTCTTAACAT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGAACTCAACTTAACGTTCTACTAGCAA
ACAATACTCATGTATTTCATGGATGAAACTGTCCATCATTTAAGTCCTTG
GGGGAGGAGCTAAAGTGCAGGGAATGGCAGTCCTGCATGCAAAGTTTTTT
TCTCAGGCAGACTCTGGTTCTGAGTTAGACATCATTGCGTAGCATGAGAC
CAAAGGAGAGAAGATGCTGGAAGGATTGGAAGGACAGACCTGAGAGCACA
GGGATATGGCCATTAAGGAAGACTGGTGCACTGTTCTTGTTAACCCCTTC
ATGCCCTTGCTGTTTCCCCTAGCATTACATCATCAGTATTGACTAGGCTG
ATAAAGTTCTTTATCTACATTAACCACGACCAGTACCATTTTTAAGCATT
ATATTTCATTAACAGACACCTGTCCTGGTTTGGGACATGTGACCCCTGCA
CCTTTGAATGCTTCATCTCCCCTGGGCCACTGTGTCAGAAGAGAGAGAAA
GTTGGTATTCAGGTGTGAGTGTGGGAGAGGAAGGGTGATAGGGTGTTTTN
NNTTTTTTTTTNTTTTTTTTTGTTTNGTTGTTTTTTTTGTTTTTTTTGTG
TGTTTTGTGTTTGTTGTTTTGTTTTTGTTTGTTGTGTTGCTTTTTTCTGT
GGGTTTGTGTTTTGTCTTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_p07.b1 MSMg01no547_p07.b1 CHROMAT_FILE:
MSMg01no547_p07.b1 PHD_FILE: MSMg01no547_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:44 2005
         (683 letters)



>mm_chr2_158937086_158938168
          Length = 1083

 Score = 1122 bits (580), Expect = 0.0
 Identities = 592/596 (99%)
 Strand = Plus / Minus

                                                                        
Query: 88   agtcccccatgctaacataagcttgatctcaaatcactagatataatttcacaagtttcc 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 agtcccccatgctaacataagcttgatctcaaatcactagatataatttcacaagtttcc 1024

                                                                        
Query: 148  ataaaaatattcttcctcccttcttacctccctccctactcagaagatgaggaccacatc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ataaaaatattcttcctcccttcttacctccctccctactcagaagatgaggaccacatc 964

                                                                        
Query: 208  tggttttgttagaccctagtgcctcaaacacagacagtctggctcatagtgtgtgtttaa 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  tggttttgttagaccctagtgcctcaaacacagacagtctggctcatagtgtgtgtttaa 904

                                                                        
Query: 268  gatgcatttggtgatcagatttggatggcaaagagataaaatactttaaagcaaagttgg 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  gatgcatttggtgatcagatttggatggcaaagagataaaatactttaaagcaaagttgg 844

                                                                        
Query: 328  tcaatggtcttccttttcctaagaggaaaaaggaataccaagaaactgaggttgactttc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  tcaatggtcttccttttcctaagaggaaaaaggaataccaagaaactgaggttgactttc 784

                                                                        
Query: 388  ccttcaccttcatttcataggagtcaactgcccattggtgggtcacaaatctagacaggc 447
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 783  ccttcaccttcatttcataggagtcaactgcctattggtgggtcacaaatctagacaggc 724

                                                                        
Query: 448  gctatgaaaacatcttcaccctgaagtatgccccattggactttgagaaaccacagatgc 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  gctatgaaaacatcttcaccctgaagtatgccccattggactttgagaaaccacagatgc 664

                                                                        
Query: 508  tgctataaataccagaggaaatcaaagtttggagtctaaggtgaagagaagtttgggtaa 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  tgctataaataccagaggaaatcaaagtttggagtctaaggtgaagagaagtttgggtaa 604

                                                                        
Query: 568  gatgattttgtaaaatacttcaggaaagtatgcagatatagccgagctttggaaagacct 627
            |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||
Sbjct: 603  gatgattttgtaaaatacttcaagaaagtatgcagatatagccgagcttcagaaagacct 544

                                                                    
Query: 628  tgaggtcagaagctctgtttcaccaaaagatcaaatatcctgtgcctgctcttaac 683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  tgaggtcagaagctctgtttcaccaaaagatcaaatatcctgtgcctgctcttaac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_p07.g1 MSMg01no547_p07.g1 CHROMAT_FILE:
MSMg01no547_p07.g1 PHD_FILE: MSMg01no547_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:44 2005
         (520 letters)



>mm_chr2_158781887_158782806
          Length = 920

 Score =  971 bits (502), Expect = 0.0
 Identities = 514/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaactcaacttaacgttctactagcaaacaatactcatgtatttcatggatgaaact 60
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aatgaactcaacttaacgttctattagcaaacaatactcgtgtatttcatggatgaaact 260

                                                                       
Query: 61  gtccatcatttaagtccttgggggaggagctaaagtgcagggaatggcagtcctgcatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccatcatttaagtccttgggggaggagctaaagtgcagggaatggcagtcctgcatgc 320

                                                                       
Query: 121 aaagtttttttctcaggcagactctggttctgagttagacatcattgcgtagcatgagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtttttttctcaggcagactctggttctgagttagacatcattgcgtagcatgagac 380

                                                                       
Query: 181 caaaggagagaagatgctggaaggattggaaggacagacctgagagcacagggatatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaggagagaagatgctggaaggattggaaggacagacctgagagcacagggatatggc 440

                                                                       
Query: 241 cattaaggaagactggtgcactgttcttgttaaccccttcatgcccttgctgtttcccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cattaaggaagactggtgcactgttcttgttaaccccttcatgcccttgctgtctcccct 500

                                                                       
Query: 301 agcattacatcatcagtattgactaggctgataaagttctttatctacattaaccacgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcattacatcatcagtattgactaggctgataaagttctttatctacattaaccacgac 560

                                                                       
Query: 361 cagtaccatttttaagcattatatttcattaacagacacctgtcctggtttgggacatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtaccatttttaagcattatatttcattaacagacacctgtcctggtttgggacatgt 620

                                                                       
Query: 421 gacccctgcacctttgaatgcttcatctcccctgggccactgtgtcagaagagagagaaa 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gacccctgcacctttgaatgcttcatcccccctgggccactgtgtcagaagagagagaaa 680

                                                 
Query: 481 gttggtattcaggtgtgagtgtgggagaggaagggtga 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttggtattcaggtgtgagtgtgggagaggaagggtga 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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