CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAAAACATAATAAAAGCAATATACAGCAAACC
AGTAGCCATCATCAAAGTGACAATTTTCAAATAGTTTAAACCTAAATTTT
CTGCGAATTAAGCTTAGCTCCATATGGAAAATTCAGCTTCATGCTTTTCT
CCACCCTTTCTCCATTGTAAGGTCACCCAGAGCTCCATAATCACAATTAT
GTATATGGATGATGAATGCTGATATTTTATTCATAAAAATGAACAATAAA
ATCTCCTAATTAATGCTGTCTCTGAGAGCTCAGTGTGTATGTGGATATTA
TTTTGAGATACAAAAAAATGCAAAATACCCTGCCTGTGATCTATTATTCA
TTGAATGGCCTAAGAGATAGGAGTCTGATGTGTGAAGGATGAAGACACAG
ACATGTGATTGTCGACAGGACAAATAGCTTTGAAGGATTCTGGACACCAA
CTAAATTGACTGTAGGATTTAGTAGACTTTGATCTCACATTCATTTTCTA
TTTTTAAAAAAGAGTTAAAATTTGCATCTAATGGAGGAATTGAACTATTA
AATTTAACAGGTTGTGTGTCATTTAAAATTATAAATTTTATTATAAAATT
GTTAACCAATTAGGCAATAGTTTTATTGAATCCCAAAAATGAAATGCATT
TCTGGGGTGAAGAATTGGAAGGCAATGGTTTGCTTTGTGGACAAAATGG

CACTATGCACTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAACACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGCGAGT
ATTTTATTGAGGATTTTTGCATCTATATTCATAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAG
TGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGA
AATAGTTTGTGGAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCTGTCTGTTCCTGGGCTTTTTTTGGTTGGGAGACTAT
TAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCA
ACTTGATCCTGACTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTC
CATTTCGTCCAGGTTTTTCCAGTTTTGTTGAATATAACCCTTTTGTAAAA
AGATTCTGATGGTGTTTTGGGATTTCTT

Query= MSMg01no548_c04.b1 MSMg01no548_c04.b1 CHROMAT_FILE:
MSMg01no548_c04.b1 PHD_FILE: MSMg01no548_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:58 2005
         (472 letters)



>mm_chr2_133952523_133953395
          Length = 873

 Score =  882 bits (456), Expect = 0.0
 Identities = 466/470 (99%), Gaps = 3/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaggcccatacctaaaaacataataaaagcaatatacagcaaaccagtagcca 63
           ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaattcaaggtccatacct--aaacataataaaagcaatatacagcaaaccagtagcca 686

                                                                       
Query: 64  tcatcaaagtgacaattttcaaatagtttaaacctaaattttctgcgaattaagcttagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatcaaagtgacaattttcaaatagtttaaacctaaattttctgcgaattaagcttagc 626

                                                                       
Query: 124 tccatatggaaaattcagcttcatgcttttctccaccctttctccattgtaaggtcaccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccatatggaaaattcagcttcatgcttttctccaccctttctccattgtaaggtcaccc 566

                                                                       
Query: 184 agagctccataatcacaattatgtatatggatgatgaatgctgatattttattcataaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagctccataatcacaattatgtatatggatgatgaatgctgatattttattcataaaa 506

                                                                       
Query: 244 atgaacaataaaatctcctaattaatgctgtctctgagagctcagtgtgtatgtggatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaacaataaaatctcctaattaatgctgtctctgagagctcagtgtgtatgtggatat 446

                                                                       
Query: 304 tattttgagatac-aaaaaaatgcaaaataccctgcctgtgatctattattcattgaatg 362
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattttgagatacaaaaaaaatgcaaaataccctgcctgtgatctattattcattgaatg 386

                                                                       
Query: 363 gcctaagagataggagtctgatgtgtgaaggatgaagacacagacatgtgattgtcgaca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcctaagagataggagtctgatgtgtgaaggatgaagacacagacatgtgattgtcgaca 326

                                                             
Query: 423 ggacaaatagctttgaaggattctggacaccaactaaattgactgtagga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggacaaatagctttgaaggattctggacaccaactaaattgactgtagga 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)