BAC Information

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BAC

Clone NameMSMg01-548G12
Chromosome2 (Build37)
Map Location 20,489,763 - 20,490,083
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548G12.T7 (MSMg01no548_g12.b1)MSMg01-548G12.TJ (MSMg01no548_g12.g1)
ACCAG612760AG612761
length767753
length of high quality
(start - end)
322 (93 - 414)385 (77 - 461)
definitionCHROMAT_FILE: MSMg01no548_g12.b1 PHD_FILE: MSMg01no548_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:19 2005CHROMAT_FILE: MSMg01no548_g12.g1 PHD_FILE: MSMg01no548_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAGTTGTTAACCATTATAAGGATGATGGTCACAGGGTTGTTAC
AGAAGATTTGACAGTCTTTAAAGGACCAGATGTACACTGTGGCATCATCC
AGGTGATTTTTGTTTCCCTGAAAGAAGCATTCGTACAAACAAGTGTAAAA
ATCAATTACAACCATTACATATGGTTCAATGTAAAAACTCCTCAAGCACA
GGGAACTGACGAAGGTCATAACCAAGGCCCTTGAAAACGGTTGAAGCCAA
CATGGTAGTAAGTTCCGGCTGAACTGATGTAAGAAAAGAGTTGACTGGGC
CAGTGAAATGGCTTAGTGAGAAAAGGTGCTTGCTTACTAACCGATGACAT
GAGTTCAATCCCTGGTAGAAGGAGAGAAGCAACTCTAAGAAGTTGTCCTC
CAGCCTACACGCATAGACACACACATACATGCATATGTACATGAACACAT
GCTATTCGGACAGACAGACAATCAGACAGGAGTAAAAAGAAAAAGGAATG
TTGGTGGTGGCTCACACCTTTTAACTTCAGTATTCAAGAATCAAAAGCCA
TGGCATAATATCTATTGAGCTCAAAGGCCCAGCTTAGTCCTACAAAAATG
AAGTTCCTAGGAACACCCCATGTAAAGTCTACTCAGTAATAAATTCTTAT
TTTTTATATTAATCAATAACTCAGAACCAATTACTCTTTAAAAATATTTT
ATTGTGTTGGGCACTAT
ACGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAGGAAAGGAAGCTGAAGCAGA
TGCTCTTGGACTGCCATCAGTAGGAGTTAGGGGAAGGCTTTGGGTCAGAC
AGAGCTTAAGGGAGAAATACCCACTGTACTAGCTAGTTTATGTCAACTTG
ACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCT
CCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGAAA
GGCCCCTTGTGGATGGGACCATCTCTGGGCTGGTTGTCTTGGGTTCTAAA
AGAGAGCAGGCTGAGCAAGCCAGAGCAAGCAAGCCAGTAAAGGACATCAC
TCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGT
TCTGACTTCCTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTGAATAAA
CCCTTTCCTCCCCAACTTGCTTCTTGGTCCTTTGTGCAGGAATAGAAACC
CTTGACTAAGACAAATTGGTACCAGCATAGTGGGGGTTTCCTTTTGACAA
CCTTGACCAGGTTTTGGGGGAGGAAAGTGGAAGGGACTTTTGGAACTTTT
GGGCTCAAAAGAACCATTCCTCCTGTTTAAAAGCTCTTGTGAATAATATT
GTGGAAAAGAACCTTGGGAAAGATTATTGGTTTGAAAAACTGGTGCATTA
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_g12.b1 MSMg01no548_g12.b1 CHROMAT_FILE:
MSMg01no548_g12.b1 PHD_FILE: MSMg01no548_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:19 2005
         (322 letters)



>mm_chr2_20489563_20490283
          Length = 721

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgttacagaagatttgacagtctttaaaggaccagatgtacactgtggcatcatccag 60
           ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 521 gttgttagagaagatttgacactctttaaaggaccagatgtacactgtggcatcatcccg 462

                                                                       
Query: 61  gtgatttttgtttccctgaaagaagcattcgtacaaacaagtgtaaaaatcaattacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 461 gtgatttttgtttccctgaaagaagcattcgtacaaacaagtgtaaaaatcaa-tacaac 403

                                                                       
Query: 121 cattacatatggttcaatgtaaaaactcctcaagcacagggaactgacgaaggtcataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cattacatatggttcaatgtaaaaactcctcaagcacagggaactgacgaaggtcataac 343

                                                                       
Query: 181 caaggcccttgaaaacggttgaagccaacatggtagtaagttccggctgaactgatgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caaggcccttgaaaacggttgaagccaacatggtagtaagttccggctgaactgatgtaa 283

                                                                       
Query: 241 gaaaagagttgactgggccagtgaaatggcttagtgagaaaaggtgcttgcttactaacc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 282 gaaaagagttgactgggccagtgaaatggcttagtgggaaaaggtgcttgcttacaaacc 223

                                 
Query: 301 gatgacatgagttcaatccctg 322
           ||||||||||||||||||||||
Sbjct: 222 gatgacatgagttcaatccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)