Query= MSMg01no548_p17.b1 MSMg01no548_p17.b1 CHROMAT_FILE:
MSMg01no548_p17.b1 PHD_FILE: MSMg01no548_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:03 2005
(452 letters)
>mm_chr2_128820769_128821616
Length = 848
Score = 789 bits (408), Expect = 0.0
Identities = 436/448 (97%), Gaps = 6/448 (1%)
Strand = Plus / Minus
Query: 5 gaattcacagtaggtaggcagttccaggggagctaagacctctagcctccacagcactaa 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcacagtaggcaggcagttccaggggagctaagacctctagcctccacagcactaa 403
Query: 65 tgtgcacacaccttccccacatctacacatcattaaaaaataaatctgcaaagaaaaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 402 tgtgcacacaccttccccacatctacacatcattaaaaaataaatctgcaaagaa----a 347
Query: 125 aacaaaaaaaagcaaggtgatagtgactgagaaatgacagtcaaagttgtcttctggctt 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aacaaaaaaaggcaaggtgatagtgactgagaaatgacagtcaaagttgtcttctggctt 287
Query: 185 tcgtgggtatacacaaaggtacaaatgcatccgccacacatatacctttgtgcacacata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcgtgggtatacacaaaggtacaaatgcatccgccacacatatacctttgtgcacacata 227
Query: 245 gacaaggaatggggaagagagagagagatggcttagcagttaataccgctcgcttctctt 304
||||| ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 226 gacaaagaatgggga--agagagagagatggcttagtagttaataccgcttgcttctctt 169
Query: 305 ccagaggacaagtgttcagtctccagcacccagatggaatcttataacaatctgtaactc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ccagaggacaagtgttcagtctccagcacccagatggaatcttataacaatctgtaactc 109
Query: 365 cagccccaggggatccaatgtctcttctagcccctgggggcactgcatgtacatggtgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 cagccccaggggatccaatgtctcttctagcccctgggggcactgcatgtacatggtgta 49
Query: 425 aaaatgtacacactaaataacaaaatca 452
||||||||||||| ||||||||||||||
Sbjct: 48 aaaatgtacacacaaaataacaaaatca 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 848
Length adjustment: 10
Effective length of query: 442
Effective length of database: 838
Effective search space: 370396
Effective search space used: 370396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p17.g1 MSMg01no548_p17.g1 CHROMAT_FILE:
MSMg01no548_p17.g1 PHD_FILE: MSMg01no548_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:03 2005
(594 letters)
>mm_chr2_128663571_128664564
Length = 994
Score = 1141 bits (590), Expect = 0.0
Identities = 593/594 (99%)
Strand = Plus / Plus
Query: 1 catagagggtcaagtgcttaaggagctagtatatttgtctgatccaaagaatcttgcatt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagagggccaagtgcttaaggagctagtatatttgtctgatccaaagaatcttgcatt 260
Query: 61 ttatccaaaacatacttgaattcagtgggaaggtcagatcattgtgcacagagcagttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatccaaaacatacttgaattcagtgggaaggtcagatcattgtgcacagagcagttaa 320
Query: 121 tctgtgtgttgtcactaagttcacctcacataattttgtttggctcttagaagaggacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgtgttgtcactaagttcacctcacataattttgtttggctcttagaagaggacat 380
Query: 181 ttttcaaagtattaaaaaagctttattccagttgtcttgatacatttgcactgtgtgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcaaagtattaaaaaagctttattccagttgtcttgatacatttgcactgtgtgttt 440
Query: 241 ccaatctgttctttagttctctgagcatatttattcctttgcataattatgaatccttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatctgttctttagttctctgagcatatttattcctttgcataattatgaatccttcc 500
Query: 301 tataatctcaaatatgtgtgtgtataattcataggaaattaattttttctaaaaaaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataatctcaaatatgtgtgtgtataattcataggaaattaattttttctaaaaaaaact 560
Query: 361 aggaaaaatactaccccacatataaacacagtattacacattttaaaatttgcatattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaaaaatactaccccacatataaacacagtattacacattttaaaatttgcatattca 620
Query: 421 gcagttagatactggctgttttgaaacaagtgcttaaattatagtttgtttctcccttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagttagatactggctgttttgaaacaagtgcttaaattatagtttgtttctcccttcc 680
Query: 481 cacggtctcccacctccactctgctttttttgcacgagtatgtccctttaccattagggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacggtctcccacctccactctgctttttttgcacgagtatgtccctttaccattagggg 740
Query: 541 aggtcaggagctagtttttctgatagtcccagttctaggtttggtgtaaaaaag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggtcaggagctagtttttctgatagtcccagttctaggtttggtgtaaaaaag 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
