BAC Information

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BAC

Clone NameB6Ng01-002D08
ChromosomeX (Build37)
Map Location 163,702,721 - 163,855,953
singlet/doubletdoublet
Overlap geneTlr7, Prps2
Upstream geneGpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8
Downstream geneEG627311, Frmpd4, EG667822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002D08.bB6Ng01-002D08.g
ACCDH840300DH840301
length1,1831,085
definitionDH840300|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D08, 5' end.DH840301|Mus musculus domesticus DNA, BAC clone: B6Ng01-002D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,702,721 - 163,703,925)(163,854,861 - 163,855,953)
sequence
gaattcctcattgagtgagagcaagagggattggatgagcattgtagagt
ctggggatttttcccttttctcatttggttggataaaattagacttggag
cttccagggccagggccccaccacatatttcatagaaaggtattcacaat
caaaaaccttggagcaacatctggtccacaagtaaacacacacacacaca
cacacacacaaaacaaaaaaccaaaaatttacaaaggaacacttggcaat
ttggcatgttgaagcactagcttcaatctctaattataaaaacacccctc
tcaaaaactaattctaatttttttctgattaccatgtacatagtaaaatc
taccctcagctattattctgttttgaattttataaatgaaataattgtga
gatattgtttttcagttaccatgtaaggatatacatgatatcagaaattc
acctcttgtcccaaaatgccaacttttaacagaaagtccttgctggcctc
tggagaaagaagtatgtcagagtgaggtgctctgttctatagagcctcct
cctactaagtaagaggtaaacacactgtgtgtcattcacagaaatgtgga
ccacagaaagcctggttatagaaaaaaatgccttgaagaagtcatagaat
accttggataacctttcctagactgacttctgagtatcagtccctgaggt
attcacgatttggccatggtcggggagagctttctaggatccaggtcatc
aaggaacagagacagcttaaacatttgtgacataaccagaaatctttttt
ttttaacagaggaaagatttacttgggcttacagtttacgaatcagtatg
ctccattaccacagggaaaggcatggtctcagggaggatggggcctcaga
aatcaaaggctatatttagacacctctcactttttttgtttctcctgaac
actgttcaaagaaagttctaagcagtatgatggtgcacactgtatctgag
cacttggatgtagagcagagggtctcatgcatttgaagacagctgtctcc
atggtgattccagtcatgtgacattcttatttagaactcatgctcttagc
acataacagcgccaactgaaacctagtggaatggctggcaggctatcttg
ttcgaaagaaaatgactcttgtggttgggttca
gaattcttagcattgctggtgagaacctgaaattgcagccattgtgcaaa
atagtatggcagttcataaaataataaatgtggaattatgttgttgtgca
agcatcctacctttgaagtctggggcatgaacagataaacagacgtcagt
atatcagcagcactgtttataattaattaaaggtgagtaaaacccaaatg
tctgtggacagatcaaaggctaatactgatatgacacacacagacaatga
ggtgttatttagcctttaagaagaataaagttgtggaccatgctacagca
tgaatgaacttagaagacattgttctatggtacacaataaagggacaggt
actgtacagttccacttatatgtggtgctgatattcacagtgacagaaaa
taggaaggtagttttcagaatctgaggaaggagagggaattacttaaaaa
gtacagcaattcaggtttgaaagatgaaaaagatctagagaagggaatcc
aaacagaatgtgaaggagcaagatgaaacactcaaatactaactggaaaa
atacagcatgtaactaacgaggttcctagaaagataaagggacctggagg
gacatgaaaaagtaaagaaatgacagaaggaagattttttttctgggata
aaaaaaaaataggtttgcatactgagtgggctcaatgaagcccagataat
ccgagagatttgtgtagcagcaattggataatattcttgagctctgaaag
cacagagggaagcttataggcattattcagactgcaagaaaacatagtag
atgtccaaccgcgggaggaacagatgaggataatgtaacaaacacaccca
aataatatgtttctgcaatattgaagaatcaagttgtgacttatgcaggg
aagtggtgcactggagatcaacctatttagtaaattaagcaatcttagaa
aggtccatggcctgaattgtctctcattctcattcctagtgtatatggtt
acataaagtcacatacatatatgttatagaaacattttatgacttggaag
cagaagcaacctgcttcaagaacaaaggggactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163702721_163703925
seq2: B6Ng01-002D08.b_48_1230

seq1  GAATTCCTCATTGAGTGAGAGCAAGAGGGATTGGATGAGCATTGTAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATTGAGTGAGAGCAAGAGGGATTGGATGAGCATTGTAGAGT  50

seq1  CTGGGGATTTTTCCCTTTTCTCATTTGGTTGGATAAAATTAGACTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATTTTTCCCTTTTCTCATTTGGTTGGATAAAATTAGACTTGGAG  100

seq1  CTTCCAGGGCCAGGGCCCCACCACATATTTCATAGAAAGGTATTCACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGGCCAGGGCCCCACCACATATTTCATAGAAAGGTATTCACAAT  150

seq1  CAAAAACCTTGGAGCAACATCTGGTCCACAAGTAAACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCTTGGAGCAACATCTGGTCCACAAGTAAACACACACACACACA  200

seq1  CACACACACAAAACAAAAAACCAAAAATTTACAAAGGAACATTTGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACACACACAAAACAAAAAACCAAAAATTTACAAAGGAACACTTGGCAAT  250

seq1  TTGGCATGTTGAAGCACTAGCTTCAATCTCTAATTATAAAAACACCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGTTGAAGCACTAGCTTCAATCTCTAATTATAAAAACACCCCTC  300

seq1  TCAAAAACTAATTCTAATTTTTTTCTGATTACCATGTACATAGTAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTAATTCTAATTTTTTTCTGATTACCATGTACATAGTAAAATC  350

seq1  TACCCTCAGCTATTATTCTGTTTTGAATTTTATAAATGAAATAATTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCAGCTATTATTCTGTTTTGAATTTTATAAATGAAATAATTGTGA  400

seq1  GATATTGTTTTTCAGTTACCATGTAAGGATATACATGATATCAGAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTTTTCAGTTACCATGTAAGGATATACATGATATCAGAAATTC  450

seq1  ACCTCTTGTCCCAAAATGCCAACTTTTAACAGAAAGTCCTTGCTGGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGTCCCAAAATGCCAACTTTTAACAGAAAGTCCTTGCTGGCCTC  500

seq1  TGGAGAAAGAAGTATGTCAGAGTGAGGTGCTCTGTTCTATAGAGCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAAGTATGTCAGAGTGAGGTGCTCTGTTCTATAGAGCCTCCT  550

seq1  CCTACTAAGTAAGAGGTAAACACACTGTGTGTCATTCACAGAAATGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAAGTAAGAGGTAAACACACTGTGTGTCATTCACAGAAATGTGGA  600

seq1  CCACAGAAAGCCTGGTTATAGAAAAAAATGCCTTGAAGAAGTCATAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAAGCCTGGTTATAGAAAAAAATGCCTTGAAGAAGTCATAGAAT  650

seq1  ACCTTGGATAACCTTTCCTAGACTGACTTCTGAGTATCAGTCCCTGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGATAACCTTTCCTAGACTGACTTCTGAGTATCAGTCCCTGAGGT  700

seq1  ATTCACGATTTGGCCATGGTCGGGGAGAGCTTTCTAGGATCCAGGTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGATTTGGCCATGGTCGGGGAGAGCTTTCTAGGATCCAGGTCATC  750

seq1  AAGGAACAGAGACAGCTTAAACATTTGTGACATAACCAGAAATCTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAGAGACAGCTTAAACATTTGTGACATAACCAGAAATCTTTTTT  800

seq1  TTTTAACAGAGGAAAGATTTACTTGGGCTTACAGTTTACGAATCAGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAGAGGAAAGATTTACTTGGGCTTACAGTTTACGAATCAGTATG  850

seq1  CTCCATTACCACAGGG-AAGGCATGGTCTCAGGGAGGATGGGGCCTCAGA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCCATTACCACAGGGAAAGGCATGGTCTCAGGGAGGATGGGGCCTCAGA  900

seq1  AATCAAAGGCTATATTTAGACACCTCTCACTTTTTTTGTTTCTCCTGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGGCTATATTTAGACACCTCTCACTTTTTTTGTTTCTCCTGAAC  950

seq1  ACTGTTCAAAAGAAAGTTCTAAGCAAGTATGATGGTGCACACTGTAATCT  999
      ||||||| |||||||||||||||| |||||||||||||||||||| ||||
seq2  ACTGTTC-AAAGAAAGTTCTAAGC-AGTATGATGGTGCACACTGT-ATCT  997

seq1  GAGCACTTGGATGGTAGAAGCAGGAGGGTCTCCATGCATTTGAAGACAGC  1049
      |||||||||||| |||| |||| |||||||| ||||||||||||||||||
seq2  GAGCACTTGGAT-GTAG-AGCA-GAGGGTCT-CATGCATTTGAAGACAGC  1043

seq1  CTGGTCTCCATGGTGAATTCCAGGTCATGTTGACATCCTATTTTAGAAAC  1099
         |||||||||||| |||||| |||||| |||||| ||  ||||| |||
seq2  --TGTCTCCATGGTG-ATTCCA-GTCATG-TGACATTCTTATTTAG-AAC  1087

seq1  TCAATGCTCTAAGCAACAATAACAGCGCAAACAGAAACATAGTGAGATGG  1149
      || ||||||| ||||   |||||||||| ||| ||||| |||||  ||||
seq2  TC-ATGCTCTTAGCA--CATAACAGCGCCAACTGAAACCTAGTGGAATGG  1134

seq1  CTGAGCAGGCTATCTTGGTTCAGATAGAAGAATATGACTCTTGTGGTCTG  1199
      ||| |||||||||||| |||| ||   ||||| |||||||||||||| ||
seq2  CTG-GCAGGCTATCTT-GTTC-GA---AAGAAAATGACTCTTGTGGT-TG  1177

seq1  GGTTCA  1205
      ||||||
seq2  GGTTCA  1183

seq1: chrX_163854861_163855953
seq2: B6Ng01-002D08.g_70_1154 (reverse)

seq1  TTAGTCCCCTTTG-TCTTGAAGGCAGGTTTGCTTCTGCTTTCAAGTCATA  49
      ||||||||||||| ||||||| ||||| |||||||||||| |||||||||
seq2  TTAGTCCCCTTTGTTCTTGAA-GCAGG-TTGCTTCTGCTTCCAAGTCATA  48

seq1  TAAATGTTTCTATAACATATATGTATGTGACTTTATGTAACCATATACAA  99
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -AAATGTTTCTATAACATATATGTATGTGACTTTATGTAACCATATACA-  96

seq1  CCTAGGAATGAGAAATGAGAGACAATTCAGGCCATGGACCTTTCTAAGAT  149
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -CTAGGAATGAG-AATGAGAGACAATTCAGGCCATGGACCTTTCTAAGAT  144

seq1  TGCTTTAATTTACTAAATAGGTTGATCTCCAGTTGCACCCACTTCCCTGC  199
      ||| |||||||||||||||||||||||||||| |||| ||||||||||||
seq2  TGC-TTAATTTACTAAATAGGTTGATCTCCAG-TGCA-CCACTTCCCTGC  191

seq1  ATAAGTCACAACTTGATTCTTCAATATTGCAGAAACATATTATTTGGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCACAACTTGATTCTTCAATATTGCAGAAACATATTATTTGGGTG  241

seq1  TGTTTGTTACATTATCCTCATCTGTTCCTCCCGCGGTTGGACATCTACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTACATTATCCTCATCTGTTCCTCCCGCGGTTGGACATCTACTA  291

seq1  TGTTTTCTTGCAGTCTGAATAATGCCTATAAGCTTCCCTCTGTGCTTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGCAGTCTGAATAATGCCTATAAGCTTCCCTCTGTGCTTTCA  341

seq1  GAGCTCAAGAATATTATCCAATTGCTGCTACACAAATCTCTCGGATTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAGAATATTATCCAATTGCTGCTACACAAATCTCTCGGATTATC  391

seq1  TGGGCTTCATTGAGCCCACTCAGTATGCAAACCTATTTTTTTTTTATCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCATTGAGCCCACTCAGTATGCAAACCTATTTTTTTTTTATCCC  441

seq1  AGAAAAAAAATCTTCCTTCTGTCATTTCTTTACTTTTTCATGTCCCTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAATCTTCCTTCTGTCATTTCTTTACTTTTTCATGTCCCTCCA  491

seq1  GGTCCCTTTATCTTTCTAGGAACCTCGTTAGTTACATGCTGTATTTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTTATCTTTCTAGGAACCTCGTTAGTTACATGCTGTATTTTTCC  541

seq1  AGTTAGTATTTGAGTGTTTCATCTTGCTCCTTCACATTCTGTTTGGATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTATTTGAGTGTTTCATCTTGCTCCTTCACATTCTGTTTGGATTC  591

seq1  CCTTCTCTAGATCTTTTTCATCTTTCAAACCTGAATTGCTGTACTTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTAGATCTTTTTCATCTTTCAAACCTGAATTGCTGTACTTTTTA  641

seq1  AGTAATTCCCTCTCCTTCCTCAGATTCTGAAAACTACCTTCCTATTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCCCTCTCCTTCCTCAGATTCTGAAAACTACCTTCCTATTTTCT  691

seq1  GTCACTGTGAATATCAGCACCACATATAAGTGGAACTGTACAGTACCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGAATATCAGCACCACATATAAGTGGAACTGTACAGTACCTGT  741

seq1  CCCTTTATTGTGTACCATAGAACAATGTCTTCTAAGTTCATTCATGCTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATTGTGTACCATAGAACAATGTCTTCTAAGTTCATTCATGCTGT  791

seq1  AGCATGGTCCACAACTTTATTCTTCTTAAAGGCTAAATAACACCTCATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTCCACAACTTTATTCTTCTTAAAGGCTAAATAACACCTCATTG  841

seq1  TCTGTGTGTGTCATATCAGTATTAGCCTTTGATCTGTCCACAGACATTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTCATATCAGTATTAGCCTTTGATCTGTCCACAGACATTTG  891

seq1  GGTTTTACTCACCTTTAATTAATTATAAACAGTGCTGCTGATATACTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACTCACCTTTAATTAATTATAAACAGTGCTGCTGATATACTGAC  941

seq1  GTCTGTTTATCTGTTCATGCCCCAGACTTCAAAGGTAGGATGCTTGCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTATCTGTTCATGCCCCAGACTTCAAAGGTAGGATGCTTGCACA  991

seq1  ACAACATAATTCCACATTTATTATTTTATGAACTGCCATACTATTTTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATAATTCCACATTTATTATTTTATGAACTGCCATACTATTTTGCA  1041

seq1  CAATGGCTGCAATTTCAGGTTCTCACCAGCAATGCTAAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGCAATTTCAGGTTCTCACCAGCAATGCTAAGAATTC  1085