BAC Information

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BAC

Clone NameB6Ng01-002L09
ChromosomeX (Build37)13 (Build37)
Map Location 4,691,189 - 4,691,78666,385,973 - 66,386,990
singlet/doubletsingletsinglet
Overlap geneLOC668967
Upstream geneLOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275
Downstream geneLOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002L09.bB6Ng01-002L09.g
ACCDH840654DH840655
length9371,098
definitionDH840654|Mus musculus domesticus DNA, BAC clone: B6Ng01-002L09, 5' end.DH840655|Mus musculus domesticus DNA, BAC clone: B6Ng01-002L09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,691,189 - 4,691,786)(66,385,973 - 66,386,990)
sequence
gaattctaaacccatggtctgctcaaggactttctaggacagtggaacac
cggtcaaggcttggctatgtctaaaatttctacctttctagccttaatgt
atgttatatcctgtcttcttactaagactactactttaagacatcttttg
cctctaaatttttatctatataatatgttgctctgacaaagctatggaaa
tatccctatgcttatcattagcaaaatgggcagtatgtagctgctgatct
aaagctgtggtagatacctttttaaagtttgcattttcagattttaaaac
caaggatcattttctaactctaatgggcagcaaagcataagcaggtctct
tacaaaaacataacagtagattccttatctaaattaggatttacacaatt
agttaattgacaagaattacaatgaataatttagacttgccaagattggc
gatcttaactcttaaaattatctaacaataagcatataggtaaggtatac
aaactttcatagctataaggagctggcctgagtggccaaaaacagtgtct
ctgacgaaagcatcttgtacattctctgtaccagtctttttgcctcacga
gtcagcttttttagttgtttgtattttaagttggcaccaggttggtactc
cttgctgcagcccatggtggagatacgaagtttctctatctgtttgtaag
tggatgctctccaatttctcctcttttgtgcactcagcacagctttttgg
tcaccactgtcagggcactcacaggtcacaggtcagcctgtcacatgccc
cccccccccgctcttgtagcattctgtggaaaaaacagaaacattccccc
ttttccccatattaagtatctgaacaggatcatggcagtgccaactgccc
ttagacactattttatccagttttccaaacaatatgt
gaattccatttatattcctgaccctctgaccatctcttgtctctcacaac
acctgttcctggccagtcgcccttccccttacttatccactctcccatcc
aattctctctctttcttccatctgcgtcctctgactgttttattcccctt
ttgaatgagattcaacaatgctcattagggcttttcttcttgtttagctt
ctttgattctattgaatatagtgtggatatcctgtactttatggttaatg
ttcacttgtaagtgagtacatatattcatgtcattttgtttctgggttac
ctcactcaggatgatagtttctacctgtatccattgtcctggaaaattca
tgatgtccttgtttttaatagcttattattattccattttgtaaataaac
cacattttctgtatacgtatttcgggtgagggacatctggattgtttgca
gtttctagttgttacaaataaaatgggatatgtctctattttggcaagtt
ttctttggccattccctcagtctctgatccagctttgcctctgcatttct
ctttgacaggacaaatgctgtttctttgtgtttacagcgttgtggtttaa
tctgattcataattttcataattcaaatttttagcaaaattttattaatg
tttacagtttaacccggtgtacctcatgtttctgcaagatgaatacagaa
ctgcagttaatatataattctttgtaggaacttcagtgcagaactatggg
tttcttttctatcatttttgtttccttgggtggcatttgcaggggagtca
gggtctttttttcttaagcacccatacattcaccatttggtctctgtccc
taaatcacataagatacagtagacacatttgctattcaatgctaagctaa
tttgcaagcctggtggtttaaggtttttaatttttattatttttggattt
gttgtcgaaaaaaaattttcctctgtgaaatccttttttgccctaattag
taaggtatagaaaccaacatcaaccacctattcatgtttgtacaataagc
aaatgctctgtgcaatcttaatccacatctcaactttgaaatttgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_4691189_4691786
seq2: B6Ng01-002L09.b_49_643

seq1  GAATTCTAAGCCCATGGTCTGCTCAAGGACTTTCTAGGACAGTGGAACAC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCCATGGTCTGCTCAAGGACTTTCTAGGACAGTGGAACAC  50

seq1  CGGTCAAGGCTTGGCTATGTCTAAAATTTCTACCTTTCTAGCCTTAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAAGGCTTGGCTATGTCTAAAATTTCTACCTTTCTAGCCTTAATGT  100

seq1  ATGTTATATCCTGTCTTCTTACTAAGACTACTACTTTTAAGACATCTTTT  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTTATATCCTGTCTTCTTACTAAGACTACTAC-TTTAAGACATCTTTT  149

seq1  GCCTCTACATTTTTATCTATATAATATGTTGCTCTGACAAAGCTATGGAA  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAAATTTTTATCTATATAATATGTTGCTCTGACAAAGCTATGGAA  199

seq1  ATATCCCTATGCTTATCATTAGCAAAATGGACAGTATGTAGCTGCTGATC  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATCCCTATGCTTATCATTAGCAAAATGGGCAGTATGTAGCTGCTGATC  249

seq1  TAAAGCTGTGGTAGATACCTTTTTAAAGTTTGCATTTTCAGATTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTGGTAGATACCTTTTTAAAGTTTGCATTTTCAGATTTTAAAA  299

seq1  CCAAGGATCATTTTCTAACTCTAATGGGCAGCAAAGCATAAGCAGGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATCATTTTCTAACTCTAATGGGCAGCAAAGCATAAGCAGGTCTC  349

seq1  TTACAAAAACATAACAGTAGATTCCTTATCTAAATTAGGATTTATACAAT  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTACAAAAACATAACAGTAGATTCCTTATCTAAATTAGGATTTACACAAT  399

seq1  TAGTTAATTGACAAGAATTACAATGAATATTTTAGACTTGCCAAGATTGG  450
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGTTAATTGACAAGAATTACAATGAATAATTTAGACTTGCCAAGATTGG  449

seq1  CGATCTTAACTCTTAAAATTATCTAACAATAAGCATATAGGTAAGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTTAACTCTTAAAATTATCTAACAATAAGCATATAGGTAAGGTATA  499

seq1  CAAACTTTCATAGCTATAAGGAGCTGGCCTGAATGGCAAAAAAAACAGTG  550
      |||||||||||||||||||||||||||||||| ||||   ||||||||||
seq2  CAAACTTTCATAGCTATAAGGAGCTGGCCTGAGTGGC--CAAAAACAGTG  547

seq1  TCTCTGACGAAAGCATCTTGTACATTCTCTGTACCAGTCTTTTTGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACGAAAGCATCTTGTACATTCTCTGTACCAGTCTTTTTGCCT  595

seq1: chr13_66385973_66386990
seq2: B6Ng01-002L09.g_142_1167 (reverse)

seq1  AGTGAAATTTCAAAATTGAAGATGTGGATAAAGAACTGCACAGAAGCATA  50
      ||| |||||||||| ||| |||||||||| ||| | ||||||| ||||| 
seq2  AGTCAAATTTCAAAGTTG-AGATGTGGATTAAG-ATTGCACAG-AGCATT  47

seq1  TGCTTATTGTACAAAAACATG-ATAGGTGGCTGATG-TGGTGTCTATACC  98
      ||||||||||||  ||||||| |||||||| ||||| |||| ||||||||
seq2  TGCTTATTGTAC--AAACATGAATAGGTGGTTGATGTTGGTTTCTATACC  95

seq1  -TACTAA-CAGGAC-AGAAAGGGTTTCACAGAG--AAATTTTATCTCGAA  143
       ||||||  ||| | | ||||| ||||||||||  ||||||| | ||| |
seq2  TTACTAATTAGGGCAAAAAAGGATTTCACAGAGGAAAATTTTTTTTCG-A  144

seq1  CAACAAAATCCAAAATAAT-AAAATTAAAAACATAAAACCACCAGGCTTG  192
      |||||||  | |||||||| |||||||||||| | |||||||||||||||
seq2  CAACAAATCCAAAAATAATAAAAATTAAAAACCTTAAACCACCAGGCTTG  194

seq1  CAAAATAGCTTAGCATTGAATAGCAAATGTGTCTACTGTATCTTATGTGA  242
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGCTTAGCATTGAATAGCAAATGTGTCTACTGTATCTTATGTGA  244

seq1  TTTAGGGACAGAGACCAAATGGTGAATGTATGGGTGC--ATGGAAGAAAG  290
      |||||||||||||||||||||||||||||||||||||  | | || ||||
seq2  TTTAGGGACAGAGACCAAATGGTGAATGTATGGGTGCTTAAGAAAAAAAG  294

seq1  ACCCTCACTCCCCTGCAAATGTCAACCAAGGAAACAAAAATGATA-AAAA  339
      ||||| ||||||||||||||| || |||||||||||||||||||| ||||
seq2  ACCCTGACTCCCCTGCAAATGCCACCCAAGGAAACAAAAATGATAGAAAA  344

seq1  G-AACCCATAGTTCTGCACTGAAGTTCCTACAAAGAAGTATACATTAACT  388
      | ||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  GAAACCCATAGTTCTGCACTGAAGTTCCTACAAAGAATTATATATTAACT  394

seq1  GCAGTTCTGTATTCATCTTGCAGAAACATGAGGTAAACCGGGTTAAACTG  438
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGTTCTGTATTCATCTTGCAGAAACATGAGGTACACCGGGTTAAACTG  444

seq1  T-AACATTAATAAAATTTTGCTAAAAATTTGAATTATGAAAATTATGAAT  487
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTAATAAAATTTTGCTAAAAATTTGAATTATGAAAATTATGAAT  494

seq1  CAGTTTAAACCACAACGCTGTAAACACAAAG-AACAGCATTTGTCCTGTC  536
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGATTAAACCACAACGCTGTAAACACAAAGAAACAGCATTTGTCCTGTC  544

seq1  AAAGAGAAATGCAGAGGCAAAGCTGGATCAGAGACTGAGGGAATGGCCAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATGCAGAGGCAAAGCTGGATCAGAGACTGAGGGAATGGCCAA  594

seq1  AGAAAACTTGCCCAAATAGAGACATATCCCATTTTATTTGTAACAACTAG  636
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTGCCAAAATAGAGACATATCCCATTTTATTTGTAACAACTAG  644

seq1  AAACTGCAAACAATCCAGATGTCCCTCACCCGAAATACGTATACAGAAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAAACAATCCAGATGTCCCTCACCCGAAATACGTATACAGAAAA  694

seq1  TGTGGTTTATTTACAAAATGGAATAATAATAAGCTATTAAAAACAAGGAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTATTTACAAAATGGAATAATAATAAGCTATTAAAAACAAGGAC  744

seq1  ATCATGAATTTTCCAGGACAATGGATACAGGTAGAAACTATCATCCTGAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATTTTCCAGGACAATGGATACAGGTAGAAACTATCATCCTGAG  794

seq1  TGAGGTAACCCAGAAACAAAATGACATGAATATATGTACTCACTTACAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAACCCAGAAACAAAATGACATGAATATATGTACTCACTTACAAG  844

seq1  TGAACATTAACCATAAAGTACAGGATATCCACACTATATTCAATAGAATC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTAACCATAAAGTACAGGATATCCACACTATATTCAATAGAATC  894

seq1  AAAGAAGCTAAACAAGAAGAAAAGCCCTAATGAGCATTGTTGAATCTCAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTAAACAAGAAGAAAAGCCCTAATGAGCATTGTTGAATCTCAT  944

seq1  TCAAAAGGGGAATAAAACAGTCAGAGGACGCAGATGGAAGAAAGAGAGAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGGGAATAAAACAGTCAGAGGACGCAGATGGAAGAAAGAGAGAG  994

seq1  AACTGGATGGGAGAGTGGATAAGTAAGGGGAA  1018
      || |||||||||||||||||||||||||||||
seq2  AATTGGATGGGAGAGTGGATAAGTAAGGGGAA  1026