BAC Information

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BAC

Clone NameB6Ng01-003B13
ChromosomeX (Build37)17 (Build37)
Map Location 161,077,669 - 161,078,78438,714,300 - 38,714,368
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
Downstream geneMospd2, Fancb, LOC627045, Glra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B13.bB6Ng01-003B13.g
ACCDH840916DH840917
length1,1131,021
definitionDH840916|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B13, 5' end.DH840917|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(161,077,669 - 161,078,784)(38,714,300 - 38,714,368)
sequence
gaattcagatgaccagacttcctcagctaggctgtggaccactgaaccat
ctcattggccctcctaacagggcttttgatcttagaagaatggtgtggga
gcaatccagtggaataattactttgatatgctaaaatcttctctgctcta
atccaccttctggtaggtggaacgaaccagaagccagtgacctggaaact
tgaatggtattgcccataatggtcacctttcagcatacagaaggcagagg
aagacagataagcattttaagacctggtagaggaagaaagcacactgttt
gcttactcactcatgaatcaattctataacataagtgagcaaagtcagtt
taatgtaagcatcaactggcaaagtggcaggactttacccagcacctaca
ataaccaggagaaaagcacctgaagtttgtagcatatagtttagattacc
cattgatgtttacatgaaactctatacacatttgtgttcttatttaagta
aataatggtggcaagcagctaccatgtagataaatatcagtaaatgctaa
tgaaataaagtggtttgtttttctttaatatttaaaatattagcactaca
taactcatttctcagttgactattaggttggcatatcaaaagtttattca
ttcatattggacaaagttttttctcacacattcttattgggagaaaaaag
gaattaaaaacaaatgggcttaaaggtagagttgctgttctcatggactt
tggctgattttggattagggtttgacactcaggagtttgcttctgtttgc
tcgctcattactcatttattcagtaatcacttgtttgaacatccagcagc
tcacaaggcgggacaaatacaaactgtccttgtcctgttcaatatatatt
ctactttggaaggtagataaggaaggagtatatgttttaataaaatgtgc
agattatgatcgacttgctcaggaaatgaacatagccaaagggatgaaat
acaattatgggagagtacagtcttggtagatagagcgtccaagaaaattc
ttttggagagaaaagaacacaagagtctgaggattaggagggagctaaac
tgccaataataca
gaattctctagttagatctgtaccccattttgaatggatatttgatttgt
aatatctagtttcttgtgttatttatatattttggatattgaacctctat
tggatgtggagttgataaaaatcttttccctccgggcattggtggcactt
gcctttaatcccagaacctgggaggcagaggcaggtggatttctgagttc
aaggccagcctggtctatagagtgagtaccaggacagccaccgctatata
gagaaaccctgtctcaaaaaaattaacaaacaaaatttcttttcccattc
tctgggctgctgtttctttctattgaagatttcctttgtcttacagaaat
gtttcagttacacgagttcccatttactaatggttgatattagtgcctgc
actataggtgttctgttcagaaagttatcgcctctgttaatgcatatgag
tccattccccactttctcttctatcagattcagtgtttctggttttatgt
tgaggtctttgatccacttggacttgagttttggataataaacatagatg
aacttgtatttttctacatgtagatatccaatttgactagcaccatttgt
tgaagatgctttctttttccagtgtgtatttctggcttccttgtcaaaaa
tcagattccataggtgtataggtttattcatgagttctttgttttcatgc
caacaccatgtggtcttcattaccatagttttgtattacaacttgaaatc
agagattgtgatatctccaagaagttctttgatttttcaggcttgtctta
gccatcctaggttttctgtttgtttttttttttttggtttttttttgttt
tgttttgtttttttttttgatgaagtagagaattgtcctttaaagatctg
taaataattgtgttggggagtttgatgtggatggcattaaatttgtagat
gatttttggtaggatgtccactccctgataatccgacccattcaggagca
tgacgatctttccatcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161077669_161078784
seq2: B6Ng01-003B13.b_46_1158

seq1  GAATTCAGATGACCAGACTTCCTCAGCTAGGCTGTGGACCACTGAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGACCAGACTTCCTCAGCTAGGCTGTGGACCACTGAACCAT  50

seq1  CTCATTGGCCCTCCTAACAGGGCTTTTGATCTTAGAAGAATGGTGTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGCCCTCCTAACAGGGCTTTTGATCTTAGAAGAATGGTGTGGGA  100

seq1  GCAATCCAGTGGAATAATTACTTTGATATGCTAAAATCTTCTCTGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCAGTGGAATAATTACTTTGATATGCTAAAATCTTCTCTGCTCTA  150

seq1  ATCCACCTTCTGGTAGGTGGAACGAACCAGAAGCCAGTGACCTGGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTTCTGGTAGGTGGAACGAACCAGAAGCCAGTGACCTGGAAACT  200

seq1  TGAATGGTATTGCCCATAATGGTCACCTTTCAGCATACAGAAGGCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTATTGCCCATAATGGTCACCTTTCAGCATACAGAAGGCAGAGG  250

seq1  AAGACAGATAAGCATTTTAAGACCTGGTAGAGGAAGAAAGCACACTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATAAGCATTTTAAGACCTGGTAGAGGAAGAAAGCACACTGTTT  300

seq1  GCTTACTCACTCATGAATCAATTCTATAACATAAGTGAGCAAAGTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCACTCATGAATCAATTCTATAACATAAGTGAGCAAAGTCAGTT  350

seq1  TAATGTAAGCATCAACTGGCAAAGTGGCAGGACTTTACCCAGCACCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAGCATCAACTGGCAAAGTGGCAGGACTTTACCCAGCACCTACA  400

seq1  ATAACCAGGAGAAAAGCACCTGAAGTTTGTAGCATATAGTTTAGATTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGGAGAAAAGCACCTGAAGTTTGTAGCATATAGTTTAGATTACC  450

seq1  CATTGATGTTTACATGAAACTCTATACACATTTGTGTTCTTATTTAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGTTTACATGAAACTCTATACACATTTGTGTTCTTATTTAAGTA  500

seq1  AATAATGGTGGCAAGCAGCTACCATGTAGATAAATATCAGTAAATGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGTGGCAAGCAGCTACCATGTAGATAAATATCAGTAAATGCTAA  550

seq1  TGAAATAAAGTGGTTTGTTTTTCTTTAATATTTAAAATATTAGCACTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAGTGGTTTGTTTTTCTTTAATATTTAAAATATTAGCACTACA  600

seq1  TAACTCATTTCTCAGTTGACTATTAGGTTGGCATATCAAAAGTTTATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATTTCTCAGTTGACTATTAGGTTGGCATATCAAAAGTTTATTCA  650

seq1  TTCATATTGGACAAAGTTTTTTCTCACACATTCTTATTGGGAGAAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGGACAAAGTTTTTTCTCACACATTCTTATTGGGAGAAAAAAG  700

seq1  GAATTAAAAACAAATGGGCTTAAAGGTAGAGTTGCTGTTCTCATGGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAAACAAATGGGCTTAAAGGTAGAGTTGCTGTTCTCATGGACTT  750

seq1  TGGCTGATTTTGGATTAGGGTTTGACACTCAGGAGTTTGCTTCTGTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATTTTGGATTAGGGTTTGACACTCAGGAGTTTGCTTCTGTTTGC  800

seq1  TCGCTCATTACTCATTTATTCAGTAATCACTTG-TTGAACATCCAGCAGC  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCGCTCATTACTCATTTATTCAGTAATCACTTGTTTGAACATCCAGCAGC  850

seq1  TCACAAGGCGGGACAAATACAAACTGTCCTTGTCCTGTTCAATATTATAT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCACAAGGCGGGACAAATACAAACTGTCCTTGTCCTGTTCAATA-TATAT  899

seq1  TCTACTTTGGAAGGTAGATAAGGAAGGAGTATATGTTTTAATAAAATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTGGAAGGTAGATAAGGAAGGAGTATATGTTTTAATAAAATGTG  949

seq1  CAGATTATGATCGAC-TGCTCAGGAAATGAACATAGCCAAAGGGATGAAA  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGATTATGATCGACTTGCTCAGGAAATGAACATAGCCAAAGGGATGAAA  999

seq1  TACAATTA-GGGAGAGTACAGTCTTGGGTAGATAAGAGCGTCCAAGAAAA  1047
      |||||||| |||||||||||||||| ||||||| ||||||||||||||||
seq2  TACAATTATGGGAGAGTACAGTCTT-GGTAGAT-AGAGCGTCCAAGAAAA  1047

seq1  TTCTTTTGGAGAGAAAAGAACACAAGAAGTTCTGAGGGATTAGGA-GGAG  1096
      |||||||||||||||||||||||||||   ||||| ||||||||| ||||
seq2  TTCTTTTGGAGAGAAAAGAACACAAGA--GTCTGA-GGATTAGGAGGGAG  1094

seq1  CTAAAACTGCAAATAATACA  1116
      || ||||||| |||||||||
seq2  CT-AAACTGCCAATAATACA  1113

seq1: chr17_38714300_38714368
seq2: B6Ng01-003B13.g_897_1088 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TAGAAGATGGAAAGATCGTCATGCTCCTGAATGGGTCGGATTATCAGGGA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GTGGACATCCTACCAAAAATCATCTACAAATTTAATGCCATCCACATCAA  100

seq1  ------------------TAGAAGAT-------GGAAAGATCAC----CC  21
                        |   ||||       ||| |  || |     |
seq2  ACTCCCCAACACAATTATTTACAGATCTTTAAAGGACAATTCTCTACTTC  150

seq1  ATGCAAAACAAAAAACAAAAAACAAACAAACAAAAAAAAACCACAAAA  69
      || ||||| ||||||||||| |     |||||||||||||||| ||||
seq2  AT-CAAAAAAAAAAACAAAACA-----AAACAAAAAAAAACCAAAAAA  192