BAC Information

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BAC

Clone NameB6Ng01-003D14
ChromosomeX (Build37)
Map Location 165,694,920 - 165,811,296
singlet/doubletdoublet
Overlap geneArhgap6, Hccs, LOC100040950, BC022960
Upstream geneFrmpd4, EG667822, EG637566, Msl31, Amelx
Downstream geneMid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D14.bB6Ng01-003D14.g
ACCDH841002DH841003
length1,0461,071
definitionDH841002|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D14, 5' end.DH841003|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,694,920 - 165,695,974)(165,810,216 - 165,811,296)
sequence
gaattcagagtaagagagcagtgagcatttcagtggaagcaaaatgacac
agttcagtcactacccctgctttcaaaatagctgtatctggctatgcaca
cagacaccagataaggagaaaggatggggaggaaaagggcagtaccagag
atgtgttatccttcatacatcccttctttcaagacagcaattctgatgag
attgtggctgacaaagaagacataaatgtcttgggtgtggccaagaaaag
tctgtttcttgtatattgttccttgtataagaagaacaaagacccttaaa
tacattataaaagatcttggaacattaaccaattcccaaccacacttagt
aggtatttatctgtgtgcactaaagcccactaagttagtctgagtaatga
atagggaaaagtttggtaatggaaataaggcaaatggtattaactttttc
acgatttacctagatgtcaaccttgtctctatatttttcatagggttttg
tagctcttctactaaagtagtaggaaaaaattgtggagacactgagtggg
gctggcctaggtaacctctttcttaatgtagcagaaaggaaaactgtcct
cagtgcccaaacagtgtcagctcctcttggtcttacttagagtacctctc
tcttccttctgtagtgttggagcctgaggaacaactgggcaccttgcaac
tcctcatttaccttctacctccctgcaactgcgacaccctccaccgcctc
ctacagttcctctccattgtggccaggcatgctgatgataatgtcagcaa
agatggacaagaggtatgctgctataaagagagtgtcttcctttggattg
ttcacccatgcttctgttactgttcaatatgaccatacatttcaactgag
aatcgggccaacccaacatttgcattaattacttgtctcctaaattcaac
caaaacccacataaggaactaagaaacgagggtctgttcatcatacagca
gactcgattctgcaaaaacagcagcagtcacagggtgtctatagta
gaattctcattggttccctgacctgtggagggagggctattatggttgga
aaagctaaatggaaccctttagagttacctctgccaaagaaaatagtgaa
tcaaaaccagtatcatattcctaagaaattgcagaaattactgccactat
caaggacttaactatatctggaatgaaatacaatccagaattggaaggct
cacataagagacctacataaggacattggaagaaggaagatttactctct
ctctcttcttcacctgcttgccttgtgggactgagcaactgctagctaga
cctttggacttccattcacagctgctgctgaccattgttgggagttggac
tacagactttaagtcatcaacaaattatatagactacccataagttctgt
gactctagagaaccctgactaatatagcagactataataaatattaagtc
ctgttccacatgcaaagaaaactgcaacaagaaggtaggaaatgtatact
gccatatcattaaagtggaaatacttcccccatgtttcatttgattggct
ctaaaatagctcagtaaaactgtaaggagtggaggattaaagaagctaag
gttctcccagaaaaaagatcattttcaacactcatttataaatgattctc
agcatcatctagcttagtcctttttcatttcctcaaattgctgatgtggg
tccttttcatgcctaattttcctaagcaagacattatgaaatatgcagca
ttatactaataacagggtgtggagacacaccacacagaagagctcacatt
tcaaatattagtacaaggagcttcttgaattgtgtaacatttccagttct
gagaaggaacagttgggatcactgataaaaggagacaacacacatggact
ataatgtacagtccattccttgtacacatcaggaaaatgagctgatattc
tacttcacacacccatgtgggttttcagtatgtttcacgaatgatgataa
caccatagagggaataattatttggcagagacaaggacaagaagaaggaa
taattgacagagaatgtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165694920_165695974
seq2: B6Ng01-003D14.b_42_1087

seq1  GAATTCAGAGTAAGAGAGCAGTGAGCATTTCAGTGGAAGCAAAATGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTAAGAGAGCAGTGAGCATTTCAGTGGAAGCAAAATGACAC  50

seq1  AGTTCAGTCACTACCCCTGCTTTCAAAATAGCTGTATCTGGCTATGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTCACTACCCCTGCTTTCAAAATAGCTGTATCTGGCTATGCACA  100

seq1  CAGACACCAGATAAGGAGAAAGGATGGGGAGGAAAAGGGCAGTACCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCAGATAAGGAGAAAGGATGGGGAGGAAAAGGGCAGTACCAGAG  150

seq1  ATGTGTTATCCTTCATACATCCCTTCTTTCAAGACAGCAATTCTGATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTATCCTTCATACATCCCTTCTTTCAAGACAGCAATTCTGATGAG  200

seq1  ATTGTGGCTGACAAAGAAGACATAAATGTCTTGGGTGTGGCCAAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCTGACAAAGAAGACATAAATGTCTTGGGTGTGGCCAAGAAAAG  250

seq1  TCTGTTTCTTGTATATTGTTCCTTGTATAAGAAGAACAAAGACCCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTTGTATATTGTTCCTTGTATAAGAAGAACAAAGACCCTTAAA  300

seq1  TACATTATAAAAGATCTTGGAACATTAACCAATTCCCAACCACACTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATAAAAGATCTTGGAACATTAACCAATTCCCAACCACACTTAGT  350

seq1  AGGTATTTATCTGTGTGCACTAAAGCCCACTAAGTTAGTCTGAGTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTATCTGTGTGCACTAAAGCCCACTAAGTTAGTCTGAGTAATGA  400

seq1  ATAGGGAAAAGTTTGGTAATGGAAATAAGGCAAATGGTATTAACTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAAAGTTTGGTAATGGAAATAAGGCAAATGGTATTAACTTTTTC  450

seq1  ACGATTTACCTAGATGTCAACCTTGTCTCTATATTTTTCATAGGGTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTTACCTAGATGTCAACCTTGTCTCTATATTTTTCATAGGGTTTTG  500

seq1  TAGCTCTTCTACTAAAGTAGTAGGAAAAAATTGTGGAGACACTGAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTCTACTAAAGTAGTAGGAAAAAATTGTGGAGACACTGAGTGGG  550

seq1  GCTGGCCTAGGTAACCTCTTTCTTAATGTAGCAGAAAGGAAAACTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTAGGTAACCTCTTTCTTAATGTAGCAGAAAGGAAAACTGTCCT  600

seq1  CAGTGCCCAAACAGTGTCAGCTCCTCTTGGTCTTACTTAGAGTACCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCCAAACAGTGTCAGCTCCTCTTGGTCTTACTTAGAGTACCTCTC  650

seq1  TCTTCCTTCTGTAGTGTTGGAGCCTGAGGAACAACTGGGCACCTTGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTGTAGTGTTGGAGCCTGAGGAACAACTGGGCACCTTGCAAC  700

seq1  TCCTCATTTACCTTCTACCTCCCTGCAACTGCGACACCCTCCACCGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTTACCTTCTACCTCCCTGCAACTGCGACACCCTCCACCGCCTC  750

seq1  CTACAGTTCCTCTCCATTGTGGCCAGGCATGCTGATGATAATGTCAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTCCTCTCCATTGTGGCCAGGCATGCTGATGATAATGTCAGCAA  800

seq1  AGATGGACAAGAGGTATGCTGCTATAAAGAGAGTGTCTTCCTTTGGATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACAAGAGGTATGCTGCTATAAAGAGAGTGTCTTCCTTTGGATTG  850

seq1  TTCACCCATGCTTCTGTTACTGTTCAATATGACCATACATTTCAACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCATGCTTCTGTTACTGTTCAATATGACCATACATTTCAACTGAG  900

seq1  AATCGGGCCAACCCAACATTTGCATTAATTACTTGTCTCCTAAATTCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGGCCAACCCAACATTTGCATTAATTACTTGTCTCCTAAATTCAAC  950

seq1  CAAAAACCCAACATAAGGAACTTAAGAAAGGAGGGGTCTGTTCATCATAC  1000
      |||||  || ||||||||||| ||||||| || |||||||||||||||||
seq2  CAAAA--CCCACATAAGGAAC-TAAGAAACGA-GGGTCTGTTCATCATAC  996

seq1  AAGCAAGACATGGTTACAGGAAAAAGAAGCAGGCAGTCACAGGGTGTCTA  1050
       ||| |||| | | | | | |||||  |||| ||||||||||||||||||
seq2  -AGC-AGAC-TCGATTCTGCAAAAA-CAGCA-GCAGTCACAGGGTGTCTA  1041

seq1  TAGTA  1055
      |||||
seq2  TAGTA  1046

seq1: chrX_165810216_165811296
seq2: B6Ng01-003D14.g_66_1136 (reverse)

seq1  AATGACATTCTCTGTCAATTATTCCTTCTCTCTTTGTCCTTTGTTTTCTG  50
      ||||||||||||||||||||||||||||| || ||||||||   | ||||
seq2  AATGACATTCTCTGTCAATTATTCCTTCT-TC-TTGTCCTT--GTCTCTG  46

seq1  CCAAATAATTATTCCCTCTATGGTGTTATTCATTCAATTCGTGAAACATA  100
      |||||||||||||||||||||||||||| ||||   ||||||||||||||
seq2  CCAAATAATTATTCCCTCTATGGTGTTA-TCAT--CATTCGTGAAACATA  93

seq1  CTGAAAACCCACATGGGTGTGTGAAGTAGAAATATCAGCTCATTTTCCTG  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGAAAACCCACATGGGTGTGTGAAGTAG-AATATCAGCTCATTTTCCTG  142

seq1  ATTGTGTTACAAGGAATGGACTGTACATTATAGTCCATGTGTGTTGTCTC  200
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  A-TGTG-TACAAGGAATGGACTGTACATTATAGTCCATGTGTGTTGTCTC  190

seq1  CTTTTATCAGTGATCCCAACTGTTCCTTCTCAGAACTGGAAATGTTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCAGTGATCCCAACTGTTCCTTCTCAGAACTGGAAATGTTACAC  240

seq1  AATTCAAGAAGCTCCTTGTACTAATATTTGAAATGTGAGCTCTTCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGAAGCTCCTTGTACTAATATTTGAAATGTGAGCTCTTCTGTGT  290

seq1  GGTGTGTCTCCACACCCTGTTATTAGTATAATGCTGCATATTTCATAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTCCACACCCTGTTATTAGTATAATGCTGCATATTTCATAATG  340

seq1  TCTTGCTTAGGAAAATTAGGCATGAAAAGGACCCACATCAGCAATTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTAGGAAAATTAGGCATGAAAAGGACCCACATCAGCAATTTGAG  390

seq1  GAAATGAAAAAGGACTAAGCTAGATGATGCTGAGAATCATTTATAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAAGGACTAAGCTAGATGATGCTGAGAATCATTTATAAATGA  440

seq1  GTGTTGAAAATGATCTTTTTTCTGGGAGAACCTTAGCTTCTTTAATCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAAAATGATCTTTTTTCTGGGAGAACCTTAGCTTCTTTAATCCTC  490

seq1  CACTCCTTACAGTTTTACTGAGCTATTTTAGAGCCAATCAAATGAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTACAGTTTTACTGAGCTATTTTAGAGCCAATCAAATGAAACAT  540

seq1  GGGGGAAGTATTTCCACTTTAATGATATGGCAGTATACATTTCCTACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGTATTTCCACTTTAATGATATGGCAGTATACATTTCCTACCTT  590

seq1  CTTGTTGCAGTTTTCTTTGCATGTGGAACAGGACTTAATATTTATTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGCAGTTTTCTTTGCATGTGGAACAGGACTTAATATTTATTATAG  640

seq1  TCTGCTATATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGGTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGGTAGTC  690

seq1  TATATAATTTGTTGATGACTTAAAGTCTGTAGTCCAACTCCCAACAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTTGTTGATGACTTAAAGTCTGTAGTCCAACTCCCAACAATGG  740

seq1  TCAGCAGCAGCTGTGAATGGAAGTCCAAAGGTCTAGCTAGCAGTTGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCAGCTGTGAATGGAAGTCCAAAGGTCTAGCTAGCAGTTGCTCA  790

seq1  GTCCCACAAGGCAAGCAGGTGAAGAAGAGAGAGAGAGTAAATCTTCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACAAGGCAAGCAGGTGAAGAAGAGAGAGAGAGTAAATCTTCCTTC  840

seq1  TTCCAATGTCCTTATGTAGGTCTCTTATGTGAGCCTTCCAATTCTGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTCCTTATGTAGGTCTCTTATGTGAGCCTTCCAATTCTGGATT  890

seq1  GTATTTCATTCCAGATATAGTTAAGTCCTTGATAGTGGCAGTAATTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATTCCAGATATAGTTAAGTCCTTGATAGTGGCAGTAATTTCTG  940

seq1  CAATTTCTTAGGAATATGATACTGGTTTTGATTCACTATTTTCTTTGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTTAGGAATATGATACTGGTTTTGATTCACTATTTTCTTTGGCA  990

seq1  GAGGTAACTCTAAAGGGTTCCATTTAGCTTTTCCAACCATAATAGCCCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACTCTAAAGGGTTCCATTTAGCTTTTCCAACCATAATAGCCCTC  1040

seq1  CCTCCACAGGTCAGGGAACCAATGAGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  CCTCCACAGGTCAGGGAACCAATGAGAATTC  1071