BAC Information

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BAC

Clone NameB6Ng01-004C01
ChromosomeX (Build37)
Map Location 116,639,436 - 116,640,047
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665087, LOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C01.bB6Ng01-004C01.g
ACCDH841623DH841624
length1,0081,216
definitionDH841623|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C01, 5' end.DH841624|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggatagggaaagaggaagacataatccctgccttgggcatag
cttgagaatcaccctatatgggacagtagacccaggtaggagggaaccat
agatagtcaactgccacatgggcccatgtgggtggaccaaatgagaagaa
actcatgctgaccaccagtctgaccccatgtacctagagaggaaacaagt
ctgagatgactaccagcatggtgtcatacacgactagattggcatacaat
gcctgagatgaccttgacctggtaccttaatgcacaggaaaggcatgaaa
ctcctgaaattactccttaaacagctcgagactttcagagactacaggca
ccactaagtataacaagtgttggaaaaatgcaagagaaggaaaaacagta
agaagtgggcccaatgaagagagggagaactggaggcttgaggtgagtaa
cagccacctgtgggagcatggtggagtcctggcttgtgctgatactggga
gctatttctaattcagtggtcttgcagcagggctcttggtctgcttccac
ctaaggccagacagatgttttcagtataggctgacacctgagaccatgtt
tgtatgtattcctgctcagacaaaaaggtaccttggaactcagaagcaca
cgatccacacaggtatgagagaaagcctacttctcagagtgattgtagct
tgcaggggagggtatcccaagatgtgctgaggagttcaggagccttaact
ccactcctcttcttccctttttcccttatgttcattgcttctttgattct
tctgatgagtgagtcatacaagcaccaaatcttaagaaagagatttattt
gagggtccatggtatagaaaggatgaatccaggggtggctgcctttactc
ctgggagtagacatcaggaattgaacaaagggcagtgcatatttattagc
tgtcttatgggttagaacttttcagagcagaaatgtccagtgtgagagtg
atgaaatt
gaattcaaagaatcaataaaaccaagagtagttttcttgagaaaaatcaa
caagctagacaagccattatgaaacagaaggaataaaaccaggaaaaaat
ccaaagaatcattagatcttacttaaaaaccacctgtattccaaaaatat
ttggaatttaaatgaaatagaagactgttgatagattctacttaccataa
ttaagatcaggtaaacaatctcaacactcctataaccccaacagaaatag
tagtagtaattaaaattcacttatccaaaaaacaaaacaaaacaaaacaa
aacaaaacaaaaacaacaacagcaataagaagagggtcagattgtttagt
gtagaaatctaccacactttcaaaaaagcaactgttccaatacttctcaa
cctataccggaaaatagaaagggaaggaacatttatactatgaagccaga
gtcattctgaaacctaaacagcagaaagacacaatgaatagactttcaga
acaattttccttatgaacattgatgttaaaataacaaataaaataatccc
acaccaaatccaagtaaatgaatccaaaaagacataaaaaaaaaaacaca
tcatcccccataatcaaatgtgcttcattcaaaggatgcaggcacaggaa
atccaatatactaaaatccaaaaacataatccagcatataaacaaactga
aagtaagaagatcacatgatgatcttattagatatctgaaaggcctttgt
caaagtctaacatcacttcatgttaaatatcttgcataaatcagggatac
aaagcatattcataaacaaagtaaaggtaatagagagcaagtcaatataa
aacatcaaattaaatggagagaactttaaaacaattccattaaatcagga
gaaaagagatggctgtccactaactcaatgtgtcttcaatatagtacttg
aaatcctagccagagaaaaaaacaactaaaggagatcagagaataggatt
aaaaaggaagaatccaaaccatccctttttatagttgaaatgatagcata
ttatagtacaagactctacagctgaaaaacacctttcagcaggcagctaa
aacaaaaacaaagtattaaaaagaggaaaggaaaagagtaatcctctata
tgcatgatatcagcctgatcagaaaataggaaacaatatctgtgtgtaca
acattgtgtttataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116639436_116640047
seq2: B6Ng01-004C01.b_47_658 (reverse)

seq1  GGAATACATACAAACATGGTCTCAGGTGTCAGCCTATACTGAAAACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACATACAAACATGGTCTCAGGTGTCAGCCTATACTGAAAACATCT  50

seq1  GTCTGGCCTTAGGTGGAAGCAGACCAAGAGCCCTGCTGCAAGACCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCCTTAGGTGGAAGCAGACCAAGAGCCCTGCTGCAAGACCACTGA  100

seq1  ATTAGAAATAGCTCCCAGTATCAGCACAAGCCAGGACTCCACCATGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATAGCTCCCAGTATCAGCACAAGCCAGGACTCCACCATGCTCC  150

seq1  CACAGGTGGCTGTTACTCACCTCAAGCCTCCAGTTCTCCCTCTCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGGCTGTTACTCACCTCAAGCCTCCAGTTCTCCCTCTCTTCATT  200

seq1  GGGCCCACTTCTTACTGTTTTTCCTTCTCTTGCATTTTTCCAACACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCACTTCTTACTGTTTTTCCTTCTCTTGCATTTTTCCAACACTTGT  250

seq1  TATACTTAGTGGTGCCTGTAGTCTCTGAAAGTCTCGAGCTGTTTAAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTAGTGGTGCCTGTAGTCTCTGAAAGTCTCGAGCTGTTTAAGGAG  300

seq1  TAATTTCAGGAGTTTCATGCCTTTCCTGTGCATTAAGGTACCAGGTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAGGAGTTTCATGCCTTTCCTGTGCATTAAGGTACCAGGTCAAG  350

seq1  GTCATCTCAGGCATTGTATGCCAATCTAGTCGTGTATGACACCATGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCAGGCATTGTATGCCAATCTAGTCGTGTATGACACCATGCTGG  400

seq1  TAGTCATCTCAGACTTGTTTCCTCTCTAGGTACATGGGGTCAGACTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTCAGACTTGTTTCCTCTCTAGGTACATGGGGTCAGACTGGTG  450

seq1  GTCAGCATGAGTTTCTTCTCATTTGGTCCACCCACATGGGCCCATGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATGAGTTTCTTCTCATTTGGTCCACCCACATGGGCCCATGTGGC  500

seq1  AGTTGACTATCTATGGTTCCCTCCTACCTGGGTCTACTGTCCCATATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTATCTATGGTTCCCTCCTACCTGGGTCTACTGTCCCATATAGG  550

seq1  GTGATTCTCAAGCTATGCCCAAGGCAGGGATTATGTCTTCCTCTTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTCAAGCTATGCCCAAGGCAGGGATTATGTCTTCCTCTTTCCCT  600

seq1  ATCCTGGAATTC  612
      ||||||||||||
seq2  ATCCTGGAATTC  612