BAC Information

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BAC

Clone NameB6Ng01-005J09
ChromosomeX (Build37)
Map Location 155,872,747 - 155,980,701
singlet/doubletdoublet
Overlap geneMtap7d2, A830080D01Rik
Upstream geneLOC436243, LOC100040371, Rps6ka3, Eif1ay
Downstream geneLOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J09.bB6Ng01-005J09.g
ACCDH842682DH842683
length9581,131
definitionDH842682|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J09, 5' end.DH842683|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,872,747 - 155,873,714)(155,979,549 - 155,980,701)
sequence
gaattctgggacagaatttttgtgtcagttgtggtagtgcacacctgtaa
tcccagcactccggcacacttgtaattctagcacttcggagatacaaaca
ggaggaacaatgttagtctcagctatatagggtgtttcaggctagccttg
gctatgtaagaccctatctcagaacacaaaaaacaaatttaaaaaatttt
aaaaactataaatgcattaaaaactaatatttaaaacttttacaaaatgc
tgcattgattataaacataaacatagaaaggtttagttatgcttgggttc
ttgctgagaatttcggacaagggaatttcttgtgggtaaatcagaatatt
ttgttatttcttatatttttgcttgtgagcctaacatttaatggctgagc
catctctccagcccttgtcatttcttattggtcactgttccctattaagg
caaaccactttgctcaaaacaaataatcttgaagaaagaggattatcagg
gtcttagtaatgagtctgctaattgcttggtgtttaaaaaaaaagagcag
tgtgtgttcctgatcatgatacatgcacatacatgcttctacatgcacat
acatgcatgtacatgcacacacatattctattatatctccttattgctgg
gaatacagcaagtatgagcaggtctttgctgtggaattttcagagacaca
ggataggaaaaaaaaaacagtgtacgcttaaactaagatctgtcctgcca
tttagtgtacgcttagactaagatctgtcctgccattttttttttttaat
tcatgagtaagttttggttgggggaaatagactaaactgttgttctgaga
gcaactttgaagtgtgtgatgtgtgtgtgtgtgtgttttatgtatgtcta
atttgtccggagggtgctaaacctgtgtatattggaggaaatgtcccata
taatcatt
gaattcactctgtagaccaggctggttttaaactcagaaatcctcctgcc
tctacctcctggaaataaaggcatgggccaccactgccctggccagcctg
ttataaatagtgcatttaaggctagccaaaggctacaaaatgaaactctc
acaaaatattcaaaattaaattaaaaataaaaatgaagatagaactagtt
attcttccctatcggcagccaagcacttttcttggacatagtttttgttt
tgttttgttttttgagacagggtttctctgtgtagccctggctgtcctgg
atggagctcactttgtagaccaggctggcctcagaactcagaaatcctcc
tgcctctgcctcccaagtgctgggactaaaggcgagcaccaccaacgccc
ggcttggacatagtattaaactagcttaaatacaagccaaattgaagtct
tggaaccctgcaagtgaagttcgcagggtgggagatgagtatgtgtgcct
cttctgcagggagaaaccttacatttcccaaaccaccatcggcgcaggag
aggggaagaagccgcacaccaggctgcgcagctcctgttacgtaatcatt
tggactcgactataaaagccgcgcagagctcggcaagggcgcgaacgtat
ctacaaaatgtccgctgccgcctttactccaccaccactcaggcgctgag
accatgaaccagtggccaccaaggggaatgcggaagacccgcaactggga
ggggaaaatgacagaaaggaattgtggaagaggggagaaagcaggtagaa
agaaatcaaaatcaagtcttacccttctcctggagacgtgagtttcagcc
cctaaccgtcgctcacaacatggaaaaaacaattaaacaaattaacaaca
aacttagattgggggggccgaacggggaagaacgaaaaggggttcctgaa
cacaaaataccgcggtttatgtgtcctgctctgccagagcccagtctctc
caccttcagctgttgtcgctttcccgcttcttttgctacctgatcttttt
ggaactggggatgcaccagaactggcgaagcttgcctggcgccaacttcc
actgtcgctgtcctagcccagcaggaataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_155872747_155873714
seq2: B6Ng01-005J09.b_47_1004

seq1  GAATTCTGGGACAGAATTTTTGTGTCAGTTGTGGTAGTGCACACCTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGACAGAATTTTTGTGTCAGTTGTGGTAGTGCACACCTGTAA  50

seq1  TCCCAGCACTCCGGCACACTTGTAATTCTAGCACTTCGGAGATACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTCCGGCACACTTGTAATTCTAGCACTTCGGAGATACAAACA  100

seq1  GGAGGAACAATGTTAGTCTCAGCTATATAGGGTGTTTCAGGCTAGCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACAATGTTAGTCTCAGCTATATAGGGTGTTTCAGGCTAGCCTTG  150

seq1  GCTATGTAAGACCCTATCTCAGAACACAAAAAACAAATTTAAAAAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTAAGACCCTATCTCAGAACACAAAAAACAAATTTAAAAAATTTT  200

seq1  AAAAACTATAAATGCATTAAAAACTAATATTTAAAACTTTTACAAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATAAATGCATTAAAAACTAATATTTAAAACTTTTACAAAATGC  250

seq1  TGCATTGATTATAAACATAAACATAGAAAGGTTTAGTTATGCTTGGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGATTATAAACATAAACATAGAAAGGTTTAGTTATGCTTGGGTTC  300

seq1  TTGCTGAGAATTTCGGACAAGGGAATTTCTTGTGGGTAAATCAGAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGAATTTCGGACAAGGGAATTTCTTGTGGGTAAATCAGAATATT  350

seq1  TTGTTATTTCTTATATTTTTGCTTGTGAGCCTAACATTTAATGGCTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTCTTATATTTTTGCTTGTGAGCCTAACATTTAATGGCTGAGC  400

seq1  CATCTCTCCAGCCCTTGTCATTTCTTATTGGTCACTGTTCCCTATTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCCTTGTCATTTCTTATTGGTCACTGTTCCCTATTAAGG  450

seq1  CAAACCACTTTGCTCAAAACAAATAATCTTGAAGAAAGAGGATTATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTTTGCTCAAAACAAATAATCTTGAAGAAAGAGGATTATCAGG  500

seq1  GTCTTAGTAATGAGTCTGCTAATTGCTTGGTGTTTAAAAAAAAAGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTAATGAGTCTGCTAATTGCTTGGTGTTTAAAAAAAAAGAGCAG  550

seq1  TGTGTGTTCCTGATCATGATACATGCACATACATGCTTCTACATGCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCCTGATCATGATACATGCACATACATGCTTCTACATGCACAT  600

seq1  ACATGCATGTACATGCACACACATATTCTATTATATCTCCTTATTGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGTACATGCACACACATATTCTATTATATCTCCTTATTGCTGG  650

seq1  GAATACAGCAAGTATGAGCAGGTCTTTGCTGTGGAATTTTCAGAGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGCAAGTATGAGCAGGTCTTTGCTGTGGAATTTTCAGAGACACA  700

seq1  GGATAGGAAAAAAAAAACAGTGTACGCTTAAACTAAGATCTGTCCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGAAAAAAAAAACAGTGTACGCTTAAACTAAGATCTGTCCTGCCA  750

seq1  TTTAGTGTACGCTTAGACTAAGATCTGTCCTGCCATTTTTTTTTTTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTACGCTTAGACTAAGATCTGTCCTGCCATTTTTTTTTTTTAAT  800

seq1  TCATGAGTAAGTTTTGGTTGGGGGAAATAGACTAAACTGTTGTTCTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTAAGTTTTGGTTGGGGGAAATAGACTAAACTGTTGTTCTGAGA  850

seq1  GCAACTTTGAAGTGTGTGATGTGTGTGTGTGTGTGTTTTATGTATGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GCAACTTTGAAGTGTGTGATGTGTGTGTGTGTGTGTTTTATGTATG--TC  898

seq1  TATATTTGTCACGGAGGGGTGCATAAACTTGTGTATATTTGGAGGTAAAT  950
      || ||||||| |||| |||||| ||||| |||||||| ||||||| ||||
seq2  TA-ATTTGTC-CGGA-GGGTGC-TAAACCTGTGTATA-TTGGAGG-AAAT  942

seq1  GTCCAATATTAAATCATT  968
      |||| ||||  |||||||
seq2  GTCCCATAT--AATCATT  958

seq1: chrX_155979549_155980701
seq2: B6Ng01-005J09.g_69_1199 (reverse)

seq1  ATTATTTCCTTGCTGGGCTAAGGCAGACTGACAGGTGGAGTCTGGGGCCC  50
      ||||||  | |||||||||| | |||   |||| |||||   ||| ||| 
seq2  ATTATT--CCTGCTGGGCTAGGACAG--CGACA-GTGGAAGTTGGCGCCA  45

seq1  GCCAGCCAGCCTCGCCAG-TCTCGTGCAATCCCCAGGTCCCAAAAAGAAA  99
      |   || ||| ||||||| ||| |||| ||||||| || ||||||||  |
seq2  G---GCAAGCTTCGCCAGTTCTGGTGC-ATCCCCA-GTTCCAAAAAG--A  88

seq1  CAAGGTAGCAAAAAGAAGCGGGAAAGCGCACAAACAGCTGAAGGTTGGAG  149
        ||||||| |||||||||||||||||| || |||||||||||| |||| 
seq2  TCAGGTAGC-AAAAGAAGCGGGAAAGCG-AC-AACAGCTGAAGG-TGGA-  133

seq1  GAGACTGGGCTCTGGCAGAGCAGGACACATAAACCGCGGTAATTTCTGCT  199
      ||||||||||||||||||||||||||||||||||||||||| |||    |
seq2  GAGACTGGGCTCTGGCAGAGCAGGACACATAAACCGCGGTATTTT---GT  180

seq1  GTTCAGGAGCCCCTTCTTCGTTCTTCCCCG-TCCGCCCCCCCATTCTTAC  248
      |||||||| |||||| |||||||||||||| || ||||||||| || || 
seq2  GTTCAGGAACCCCTT-TTCGTTCTTCCCCGTTCGGCCCCCCCAATC-TAA  228

seq1  GTTTGTTTGTTTATTTGTTTATTTGTTTTTTTCCATTGTTGTGAGCGACG  298
      ||||| ||||| ||||||||| ||| ||||||||| ||||||||||||||
seq2  GTTTG-TTGTTAATTTGTTTAATTG-TTTTTTCCA-TGTTGTGAGCGACG  275

seq1  GTTAGGGGCTGAAACTCACGTCTCCA-GAGAAGGGTAAGACTTGATTTTG  347
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTAGGGGCTGAAACTCACGTCTCCAGGAGAAGGGTAAGACTTGATTTTG  325

seq1  ATTTCTTTCTACCTGCTTTCTCCCCTCTTCCACAATTCCTTTCTGTCATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCTACCTGCTTTCTCCCCTCTTCCACAATTCCTTTCTGTCATT  375

seq1  TTCCCCTCCCAGTTGCGGGTCTTCCGCATTCCCCTTGGTGGCCACTGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCCAGTTGCGGGTCTTCCGCATTCCCCTTGGTGGCCACTGGTT  425

seq1  CATGGTCTCAGCGCCTGAGTGGTGGTGGAGTAAAGGCGGCAGCGGACATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTCAGCGCCTGAGTGGTGGTGGAGTAAAGGCGGCAGCGGACATT  475

seq1  TTGTAGATACGTTCGCGCCCTTGCCGAGCTCTGCGCGGCTTTTATAGTCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATACGTTCGCGCCCTTGCCGAGCTCTGCGCGGCTTTTATAGTCG  525

seq1  AGTCCAAATGATTACGTAACAGGAGCTGCGCAGCCTGGTGTGCGGCTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAATGATTACGTAACAGGAGCTGCGCAGCCTGGTGTGCGGCTTCT  575

seq1  TCCCCTCTCCTGCGCCGATGGTGGTTTGGGAAATGTAAGGTTTCTCCCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCCTGCGCCGATGGTGGTTTGGGAAATGTAAGGTTTCTCCCTG  625

seq1  CAGAAGAGGCACACATACTCATCTCCCACCCTGCGAACTTCACTTGCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGCACACATACTCATCTCCCACCCTGCGAACTTCACTTGCAGG  675

seq1  GTTCCAAGACTTCAATTTGGCTTGTATTTAAGCTAGTTTAATACTATGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGACTTCAATTTGGCTTGTATTTAAGCTAGTTTAATACTATGTC  725

seq1  CAAGCCGGGCGTTGGTGGTGCTCGCCTTTAGTCCCAGCACTTGGGAGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCGGGCGTTGGTGGTGCTCGCCTTTAGTCCCAGCACTTGGGAGGCA  775

seq1  GAGGCAGGAGGATTTCTGAGTTCTGAGGCCAGCCTGGTCTACAAAGTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAGGATTTCTGAGTTCTGAGGCCAGCCTGGTCTACAAAGTGAG  825

seq1  CTCCATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAC  875

seq1  AAAACAAAACAAAAACTATGTCCAAGAAAAGTGCTTGGCTGCCGATAGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAAACTATGTCCAAGAAAAGTGCTTGGCTGCCGATAGGG  925

seq1  AAGAATAACTAGTTCTATCTTCATTTTTATTTTTAATTTAATTTTGAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAACTAGTTCTATCTTCATTTTTATTTTTAATTTAATTTTGAATA  975

seq1  TTTTGTGAGAGTTTCATTTTGTAGCCTTTGGCTAGCCTTAAATGCACTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAGAGTTTCATTTTGTAGCCTTTGGCTAGCCTTAAATGCACTAT  1025

seq1  TTATAACAGGCTGGCCAGGGCAGTGGTGGCCCATGCCTTTATTTCCAGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAGGCTGGCCAGGGCAGTGGTGGCCCATGCCTTTATTTCCAGGA  1075

seq1  GGTAGAGGCAGGAGGATTTCTGAGTTTAAAACCAGCCTGGTCTACAGAGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGGCAGGAGGATTTCTGAGTTTAAAACCAGCCTGGTCTACAGAGT  1125

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1131