BAC Information

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BAC

Clone NameB6Ng01-005L17
ChromosomeX (Build37)
Map Location 110,817,442 - 110,933,569
singlet/doubletdoublet
Overlap geneDach2
Upstream geneLOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4, Gm1866, EG546361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L17.bB6Ng01-005L17.g
ACCDH842790DH842791
length719939
definitionDH842790|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L17, 5' end.DH842791|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,817,442 - 110,818,159)(110,932,630 - 110,933,569)
sequence
gaattcagcttttaaatcccaatttatgtgtatttttcattcagttgtgg
atttatattttcttgacactactgtagcatttattgatattctaatgaat
ttaaataaaatgtttctttatgtcttcttaaaattcctgtattcttttat
taagtttatgatttttttttaaatactgtgtgttctggcattcatttagg
taatttacactagagaacacttgcagaatactagtaagttttgtgtgaga
catgctgtattggtcaaggttttgttgttgccattgtttttggttttggt
ggtggtgatgttgttgtagtccctgtttttatttttctgatttgacctag
gcatgtgaacttgtttctttggttgtgtgtacgatacaattatgtgccct
tccttagatggggccagaggcaagaaatgtgtcacctaagatcagttagt
ttgttgatgggtatgctaagttaaacatgatattgtttaaaacccatttg
tcaggatctaggcttgtgagttagcatataccatgtgttggagaatgcaa
agacaaagggaaaaagctacttacctaaggaaggtagctcatatgtggat
gatgcaggctacaggtctggaatgaggcttgtggatttgcaaatttgcag
tgagtctgagagaaagggagagaaaaggaagatttgacttacccaagaaa
ggtagctcctaagcaagca
gaattccagaatctgaaagaattgatatccagaattaaggtacaaatctg
tgtttcctgattccatctgattctgagcaaaattttattttttctggtct
gcaaacgtctttcgctctctaaattatttcttatattctttctttatatt
ataattattaaatcattgaccccttcccatttgtacttccaagatctcct
ctaggacctctctttaaatcctcgaaattctgtctgtttccttaattgtt
ggtatattatgtgagtgagtgtgttatgtgcttatgtatgtatacacact
tatatacatcacatacacacacattgctaaacacataaatactttttgtc
ttgtttaatttccctccatttcttttctttccccttggaatttctattgt
taatgtaaaaaggaagttcatataccataagtaagttatgcagttaagaa
tgtatttccaggtacatggtatatatgtttttttttcatcatttgataaa
ctaaagatatattctaggaaaataactgtctatataaaataagaaactaa
aacctctacaaaggttcagtcaacatgttctgatgacaaaacaacaaaat
atgacagatacaattaagaaaactgaagttatacatcattatgattcccc
tcataagatatgatagcgggtgatactggttttctggtaagtgcaagtaa
aaccagtatgcacatgatgatttatagttttatatgagtggaggaacaaa
tgtgttatgcttgtgctcagataattacacaagctattgattatgttgga
aacaggttgtattgggagggcttacttgaaaattcacttcacactgtctg
aatcaactgaaacaatcttatgtgattacaagcttaaaataaactagaaa
gactttgaagtcttatttctgtagagtgccattattcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110817442_110818159
seq2: B6Ng01-005L17.b_47_765

seq1  GAATTCAGCTTTTAAATCCCAATTTATGTGTATTTTTCATTCAGTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTTAAATCCCAATTTATGTGTATTTTTCATTCAGTTGTGG  50

seq1  ATTTATATTTTCTTGACACTACTGTAGCATTTATTGATATTCTAATGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTTTCTTGACACTACTGTAGCATTTATTGATATTCTAATGAAT  100

seq1  TTAAATAAAATGTTTCTTTATGTCTTCTTAAAATTCCTGTATTCTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAATGTTTCTTTATGTCTTCTTAAAATTCCTGTATTCTTTTAT  150

seq1  TAAGTTTATGATTTTTTTTTAAATACTGTGTGTTCTGGCATTCATTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATGATTTTTTTTTAAATACTGTGTGTTCTGGCATTCATTTAGG  200

seq1  TAATTTACACTAGAGAACACTTGCAGAATACTAGTAAGTTTTGTGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACACTAGAGAACACTTGCAGAATACTAGTAAGTTTTGTGTGAGA  250

seq1  CATGCTGTATTGGTCAAGGTTTTGTTGTTGCCATTGTTTTTGGTTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTATTGGTCAAGGTTTTGTTGTTGCCATTGTTTTTGGTTTTGGT  300

seq1  GGTGGTGATGTTGTTGTAGTCCCTGTTTTTATTTTTCTGATTTGACCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGATGTTGTTGTAGTCCCTGTTTTTATTTTTCTGATTTGACCTAG  350

seq1  GCATGTGAACTTGTTTCTTTGGTTGTGTGTACGATACAATTATGTGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAACTTGTTTCTTTGGTTGTGTGTACGATACAATTATGTGCCCT  400

seq1  TCCTTAGATGGGGCCAGAGGCAAGAAATGTGTCACCTAAGATCAGTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGATGGGGCCAGAGGCAAGAAATGTGTCACCTAAGATCAGTTAGT  450

seq1  TTGTTGATGGGTATGCTAAGTTAAACATGATATTGTTTAAAACCCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATGGGTATGCTAAGTTAAACATGATATTGTTTAAAACCCATTTG  500

seq1  TCAGGATCTAGGCTTGTGAGTTAGCATATACCATGTGTTGGAGAATGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCTAGGCTTGTGAGTTAGCATATACCATGTGTTGGAGAATGCAA  550

seq1  AGACAAAGGGAAAAAGCTACTTACCTAAGGAAGGTAGCTCATATGTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGGGAAAAAGCTACTTACCTAAGGAAGGTAGCTCATATGTGGAT  600

seq1  GATGCAGGCTACAGGTCTGGAATGAGGCTTGTGGATTTGCAAA-TTGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATGCAGGCTACAGGTCTGGAATGAGGCTTGTGGATTTGCAAATTTGCAG  650

seq1  TGAGTCTGAGAGAAAGGGAGAGAAAAGGAAGATATGACTTACCCAAGAAA  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAGTCTGAGAGAAAGGGAGAGAAAAGGAAGATTTGACTTACCCAAGAAA  700

seq1  GGTAGCTCCTAAGCAAGCA  718
      |||||||||||||||||||
seq2  GGTAGCTCCTAAGCAAGCA  719

seq1: chrX_110932630_110933569
seq2: B6Ng01-005L17.g_69_1006 (reverse)

seq1  TGAATATTGGCACTCTACTGGATATAAGACTTCAAAAGTC-TTCTAGTTT  49
      |||||| |||||||||||  || |||||||||| |||||| |||||| ||
seq2  TGAATAATGGCACTCTAC-AGAAATAAGACTTC-AAAGTCTTTCTAG-TT  47

seq1  TATTTTAAGCTTGTAATCACCTAAGATTGTTTCAGTTGATTCAGACAGTG  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATTTTAAGCTTGTAATCACATAAGATTGTTTCAGTTGATTCAGACAGTG  97

seq1  TGAAGTGAATTTTCAAGTAAGCCCTCCCAATACAACCTGTTTCCAACATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAATTTTCAAGTAAGCCCTCCCAATACAACCTGTTTCCAACATA  147

seq1  ATCAATAGCTTGTGTAAATTATCTGAGCACAAGCATAACACATTTGTTCC  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCAATAGCTTGTGT-AATTATCTGAGCACAAGCATAACACATTTGTTCC  196

seq1  TCCACTCATATAAAACTATAAATCATCATGTGCATACTGGTTTTACTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCATATAAAACTATAAATCATCATGTGCATACTGGTTTTACTTGC  246

seq1  ACTTACCAG-AAACCAGTATCACCCGCTATCATATCTTATGAGGGGAATC  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAGAAAACCAGTATCACCCGCTATCATATCTTATGAGGGGAATC  296

seq1  ATAATGATGTATAACTTCAGTTTTCTTAATTGTATCTGTCATATTTTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGTATAACTTCAGTTTTCTTAATTGTATCTGTCATATTTTGTT  346

seq1  GTTTTGTCATCAGAACATGTTGACTGAACCTTTGTAGAGGTTTTAGTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCATCAGAACATGTTGACTGAACCTTTGTAGAGGTTTTAGTTTC  396

seq1  TTATTTTATATAGACAGTTATTTTCCTAGAATATATCTTTAGTTTATCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATATAGACAGTTATTTTCCTAGAATATATCTTTAGTTTATCAA  446

seq1  ATGATGAAAAAAAAACATATATACCATGTACCTGGAAATACATTCTTAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAAAAAAAACATATATACCATGTACCTGGAAATACATTCTTAAC  496

seq1  TGCATAACTTACTTATGGTATATGAACTTCCTTTTTACATTAACAATAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAACTTACTTATGGTATATGAACTTCCTTTTTACATTAACAATAGA  546

seq1  AATTCCAAGGGGAAAGAAAAGAAATGGAGGGAAATTAAACAAGACAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGGGGAAAGAAAAGAAATGGAGGGAAATTAAACAAGACAAAAA  596

seq1  GTATTTATGTGTTTAGCAATGTGTGTGTATGTGATGTATATAAGTGTGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATGTGTTTAGCAATGTGTGTGTATGTGATGTATATAAGTGTGTA  646

seq1  TACATACATAAGCACATAACACACTCACTCACATAATATACCAACAATTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATAAGCACATAACACACTCACTCACATAATATACCAACAATTA  696

seq1  AGGAAACAGACAGAATTTCGAGGATTTAAAGAGAGGTCCTAGAGGAGATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAGACAGAATTTCGAGGATTTAAAGAGAGGTCCTAGAGGAGATC  746

seq1  TTGGAAGTACAAATGGGAAGGGGTCAATGATTTAATAATTATAATATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTACAAATGGGAAGGGGTCAATGATTTAATAATTATAATATAAA  796

seq1  GAAAGAATATAAGAAATAATTTAGAGAGCGAAAGACGTTTGCAGACCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATATAAGAAATAATTTAGAGAGCGAAAGACGTTTGCAGACCAGA  846

seq1  AAAAATAAAATTTTGCTCAGAATCAGATGGAATCAGGAAACACAGATTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATTTTGCTCAGAATCAGATGGAATCAGGAAACACAGATTTG  896

seq1  TACCTTAATTCTGGATATCAATTCTTTCAGATTCTGGAATTC  940
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAATTCTGGATATCAATTCTTTCAGATTCTGGAATTC  938