BAC Information

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BAC

Clone NameB6Ng01-008C20
Chromosome10 (Build37)X (Build37)
Map Location 104,053,903 - 104,054,363144,015,615 - 144,016,791
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008C20.bB6Ng01-008C20.g
ACCDH844526DH844527
length9611,161
definitionDH844526|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C20, 5' end.DH844527|Mus musculus domesticus DNA, BAC clone: B6Ng01-008C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(144,015,615 - 144,016,791)
sequence
gaattctcccctgaggattcctgaatggctgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacacaagtcagaatggataagatcaaaaattcaggtgacagc
agatgctgttgtggattggagaaagagaaacactcctccattgttagtgg
gattgcaagcttgtacaaccactctggaaatcagtctagaggttcctcag
aaaattggacatagtactaccagaggatcctgcaatacctctcctaggca
tatatcccgaaaatgttccaacctgtaagaagggcacatgttccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaaaggatacagaaattgtggtacatttacacaatgg
agtactactcaactattaaaaagaatgaatttatgaaattcctaggcaaa
tgggtggacttggtgggcatcatcctgagtgaggtaacccaatcacaaaa
gaattcacatgatttgtactcacttataagtggatattagcccagaaact
tagaatacccaaggtacaatttgcaaatctcatgaaactcaagaggaaca
aagtcaaaattgtggacactttgcccctacttagaattgggaacaaaaca
cccatggaaggagttacagagacaaagttttgagctgagcaaaaggatgg
accatctagagactgacatacccggtgatccatcccacaatcagcctcta
aacgctgacaccattgcatatacatgcaaaattttgctgaaaggaccctg
atatagctgtctcttgtgaggctatgctggggcctagcaacacagaagtg
gatgctcacagtctgctattttatggattacaggccccaatgtaggagct
agagaaagtac
gaattcattgattaaaggaacagcagttggagttaggtggataattaaac
tgtaatatttccttcaaataagaatgtaatctagtaaggaattcctatgt
cctattaaagtatgtttagccctcttcttactctcctcattgagctgtgt
tactcacaactacaacagcaccaagatggtagacctgagatctggttatt
gatgcaggaccaggctagaagctgagggctaaataattcaccagcagcat
atcagagggtatgaccacagtgggattctgccacaaactgttattactca
tttcatgaaaaagatgaaggattactctttgggaaggacctcaattacat
ctcttctctctgtataagcttaggtaatggaacccattaacctggcaaac
ctaacaagaaaaagagtaaaagaaaacacctggggtgagagacactggag
gatcaaagtcctatgtccaatgtagtggaaacagcaaagattcaaaggca
accgctggaacagataagaatattgctggaacagataagaatatgtaaag
catgttgctcatgtcaggattaggccaagtcttagatatgcatatttaat
gttcagaatcaacatgagggataataaaaatgagcataagtggctgtttg
ccttattttatgcttttatacatttatgattactatcatttatttgaaag
tacttagtccaaaatcatagcaaaaatttcacctgaaagtaaaattcctt
aggtgtataaaattccttagatttataaaatttaagatgcttacaataca
ctttctaaagttaatgaaatttaaaaagttaaaatagctaatcctatcag
ttgtctcccacaaggattctttgaaaggcaattgaacctaactcaggaaa
ttagtactcttgtcttgttcaaaccattcctcatggaatgttacagagca
aacatctgtcttctttagaatcgtttctttgattttcttttgctcgcctt
tttaagaaaaaaaaaaacaccacatttatttgtgtgtatcagcacactac
actgtagagaaaagaagtaaactgggaaatgggtgacattccaaaaagat
aatctattaactcaaggccagcttgagttactagtgtaggttagaaccat
ggagaaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-008C20.b_46_515 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||| ||||||||
seq2  TTTAATAGTTGAGTAGTACTCCATTGTGTAAATGTACCACAATTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      ||  ||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TCCTTTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||| |||||| ||||||||| |||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAACATGTGCCCTTCTTACAGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  ||| ||| ||||||||||| || ||||||||||| |||||||| |
seq2  TGGAACATTTTCGGGATATATGCCTAGGAGAGGTATTGCAGGATCCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| ||||| | |||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCTCTAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| ||||||||||| ||||||||||||||||| |||||||
seq2  GGTTGTACAAGCTTGCAATCCCACTAACAATGGAGGAGTGTTTCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||| |||| |  ||||||||||||||||||||||||||||||||| |||
seq2  TCCA-ATCCACAACAGCATCTGCTGTCACCTGAATTTTTGATCTTATCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      |||||||||||||||| |||||||||||||||||| ||||| ||||||| 
seq2  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGTTTCTCAGCCATTCA  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      | | |||||||| ||||||||
seq2  GGAATCCTCAGGGGAGAATTC  470

seq1: chrX_144015615_144016791
seq2: B6Ng01-008C20.g_67_1227

seq1  GAATTCATTGATTAAAGGAACAGCAGTTGGAGTTAGGTGGATAATTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATTAAAGGAACAGCAGTTGGAGTTAGGTGGATAATTAAAC  50

seq1  TGTAATATTTCCTTCAAATAAGAATGTAATCTAGTAAGGAATTCCTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATTTCCTTCAAATAAGAATGTAATCTAGTAAGGAATTCCTATGT  100

seq1  CCTATTAAAGTATGTTTAGCCCTCTTCTTACTCTCCTCATTGAGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAAGTATGTTTAGCCCTCTTCTTACTCTCCTCATTGAGCTGTGT  150

seq1  TACTCACAACTACAACAGCACCAAGATGGTAGACCTGAGATCTGGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAACTACAACAGCACCAAGATGGTAGACCTGAGATCTGGTTATT  200

seq1  GATGCAGGACCAGGCTAGAAGCTGAGGGCTAAATAATTCACCAGCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGACCAGGCTAGAAGCTGAGGGCTAAATAATTCACCAGCAGCAT  250

seq1  ATCAGAGGGTATGACCACAGTGGGATTCTGCCACAAACTGTTATTACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGGTATGACCACAGTGGGATTCTGCCACAAACTGTTATTACTCA  300

seq1  TTTCATGAAAAAGATGAAGGATTACTCTTTGGGAAGGACCTCAATTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAAAAAGATGAAGGATTACTCTTTGGGAAGGACCTCAATTACAT  350

seq1  CTCTTCTCTCTGTATAAGCTTAGGTAATGGAACCCATTAACCTGGCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCTGTATAAGCTTAGGTAATGGAACCCATTAACCTGGCAAAC  400

seq1  CTAACAAGAAAAAGAGTAAAAGAAAACACCTGGGGTGAGAGACACTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAGAAAAAGAGTAAAAGAAAACACCTGGGGTGAGAGACACTGGAG  450

seq1  GATCAAAGTCCTATGTCCAATGTAGTGGAAACAGCAAAGATTCAAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGTCCTATGTCCAATGTAGTGGAAACAGCAAAGATTCAAAGGCA  500

seq1  ACCGCTGGAACAGATAAGAATATTGCTGGAACAGATAAGAATATGTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTGGAACAGATAAGAATATTGCTGGAACAGATAAGAATATGTAAAG  550

seq1  CATGTTGCTCATGTCAGGATTAGGCCAAGTCTTAGATATGCATATTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCTCATGTCAGGATTAGGCCAAGTCTTAGATATGCATATTTAAT  600

seq1  GTTCAGAATCAACATGAGGGATAATAAAAATGAGCATAAGTGGCTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAATCAACATGAGGGATAATAAAAATGAGCATAAGTGGCTGTTTG  650

seq1  CCTTATTTTATGCTTTTATACATTTATGATTACTATCATTTATTTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTTATGCTTTTATACATTTATGATTACTATCATTTATTTGAAAG  700

seq1  TACTTAGTCCAAAATCATAGCAAAAATTTCACCTGAAAGTAAAATTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTCCAAAATCATAGCAAAAATTTCACCTGAAAGTAAAATTCCTT  750

seq1  AGGTGTATAAAATTCCTTAGATTTATAAAATTTAAGATGCTTACAATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATAAAATTCCTTAGATTTATAAAATTTAAGATGCTTACAATACA  800

seq1  CTTTCTAAAGTTAATGAAATTTAAAAAGTTAAAATAGCTAATCCTATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAAGTTAATGAAATTTAAAAAGTTAAAATAGCTAATCCTATCAG  850

seq1  TTGTCTCCCACAAGGATTCTTTGAAAGGCAATTGAACCTAACTCAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCCACAAGGATTCTTTGAAAGGCAATTGAACCTAACTCAGGAAA  900

seq1  TTAGTACTCTTGTCTTGTTCAAACCATTCCTCATGGAATGTTACAGAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTCTTGTCTTGTTCAAACCATTCCTCATGGAATGTTACAGAGCA  950

seq1  AACATCTGTCTTCTTTAGAATCGTTTCTTTGATTTTCTTTTGCTCGCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTCTTCTTTAGAATCGTTTCTTTGATTTTCTTTTGCTCGCCTT  1000

seq1  TTTAAAAGAAAAAAAAAAACCACCACATTTATTTTGTGTTGTATCAGGCA  1050
      |||  |||||||||||||| ||||||||||| |||||| ||||||| |||
seq2  TTT--AAGAAAAAAAAAAA-CACCACATTTA-TTTGTG-TGTATCA-GCA  1044

seq1  CACTAACAACATGTTAGAGAAAAAGAGTAAACTGGGAAAT-GGTGACATT  1099
      ||||    |||   |||||||||  ||||||||||||||| |||||||||
seq2  CACT----ACACTGTAGAGAAAAGAAGTAAACTGGGAAATGGGTGACATT  1090

seq1  CAAAGAAGATAATCATAATAACTTCAAGGCCAGCCTGAGTTACTTAGTGT  1149
      | || ||||||||| || |||| ||||||||||| |||||||| ||||| 
seq2  CCAAAAAGATAATC-TATTAAC-TCAAGGCCAGCTTGAGTTAC-TAGTG-  1136

seq1  TAGGTCTAGGAAACCCATGAGAAATGGC  1177
      ||||| |||  ||||   ||||||||||
seq2  TAGGT-TAG--AACCATGGAGAAATGGC  1161