BAC Information

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BAC

Clone NameB6Ng01-008H22
ChromosomeX (Build37)
Map Location 158,289,636 - 158,475,440
singlet/doubletdoublet
Overlap geneNhs
Upstream geneGja6, Scml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008H22.bB6Ng01-008H22.g
ACCDH844729DH844730
length1,069283
definitionDH844729|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H22, 5' end.DH844730|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,474,366 - 158,475,440)(158,289,636 - 158,289,918)
sequence
gaattccagttgtgtgcagccatgggcagtgaggtgggcttccttggctt
gaaactctatgagattaaatgcacagcaatttcctaaagcttagttatct
ctaagggaagagaagctattccggggccttaagtagccttacttatgggt
aggctggatgtgaccttggatgagagtccttcactcctgtcctcttgatc
tctccataagccacttaggttgaagattaagcaaagagacaaatgaccac
agcttggctactgcctcttctttttctgagagtaggtatacttgcggggt
agaatgtctgagctcctgccacagtgatttctggttatttttctgcccct
ggggatcagtagaggagctttacccaaggcccgttagaatcttgcagaac
cggcagaatgtgcatttgacggtttccaagcttgtaggctgagatggtct
cccttggacaatcgtagcaaagtgcagggagttttcttcaccatacagtt
gtttctctggttcttcccctgctcagtttgattcagcagatgtggagtgt
gtgccaagaatttttattgaagcaaagcttggtgatttctattcccaggc
aaactcgggaagcactggtttatagtaagaggctctgtaatgatcatccc
acactcttctttgctcactgcaatattttccccctttgccttcatggcag
atgcttgtagggttatggctcatagctcccagacctaccattttagtata
ctccagtaggattcatagctatcaataacattatctccttgccttcctcg
agatgtagtgttcagaaattaacactctcagaagcagcctgcaactgggg
cccaagaggtcctgttgtctaatgccccagctgcattgcctctctgctga
gatactctctgtcacatctgccctatttctcagacttcctggtgataaca
cccaccactcacataggaatctacttagaccgtaatcctaatcctacttt
tcttcactgtctccatttctttatttgtctcctaactcaccagcattccc
cccccccctcactaactac
tcatataagagagtggaatatgtaaactagaggaacaattcatagaagca
attgaaagggagcctcaatatgtcaagttgatatgggaaagaaaattgct
acaaaaattcaaggctttgtatctcataaagaaattttcaaaaaaataag
agactgcagttcaggcaacatgaatgaaatttatattgacaaatgaattt
tgtagttcatcataaatctctcaagtcagctcttctgctgagtatttttt
aggagtgagagatgaggagtgggttttattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158474366_158475440
seq2: B6Ng01-008H22.b_67_1135 (reverse)

seq1  GTAGTTTAGTGA-GGGGTGAGGAAATGCTGGTGAGTTAGGAGACAAATAA  49
      |||| ||||||| |||| | || |||||||||||||||||||||||||||
seq2  GTAG-TTAGTGAGGGGGGGGGGGAATGCTGGTGAGTTAGGAGACAAATAA  49

seq1  AGAAAT-GAGACAGTGAAGAAAAGTAGGAATAAGGATTACGGTCCTAAGT  98
      |||||| ||||||||||||||||||||| || ||||||||||| ||||||
seq2  AGAAATGGAGACAGTGAAGAAAAGTAGG-ATTAGGATTACGGT-CTAAGT  97

seq1  AGATTCCTATTGTGAGTGGTGGGTGTTTATCACCAGGAAGTTCTGAGAAA  148
      ||||||||| ||||||||||||||| |||||||||||||| |||||||||
seq2  AGATTCCTA-TGTGAGTGGTGGGTG-TTATCACCAGGAAG-TCTGAGAAA  144

seq1  TAGGGCAAGATGTGACAGAGAGTTATCTCAGCAGAGAGGCAATGCAGCTG  198
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGGGC-AGATGTGACAGAGAG-TATCTCAGCAGAGAGGCAATGCAGCTG  192

seq1  GGGCATTAGACAACAGGACCTCTTGGGCCCCAGTTGCAGGCTGCTTCTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGCATTAGACAACAGGACCTCTTGGGCCCCAGTTGCAGGCTGCTTCTGA  242

seq1  GAGTGTTAATTTCTGAACACTACATCTCGAGGAAGGCAAGGAGATAATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAATTTCTGAACACTACATCTCGAGGAAGGCAAGGAGATAATGT  292

seq1  TATTGATAGCTATGAATCCTACTGGAGTATACTAAAATGGTAGGTCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAGCTATGAATCCTACTGGAGTATACTAAAATGGTAGGTCTGGG  342

seq1  AGCTATGAGCCATAACCCTACAAGCATCTGCCATGAAGGCAAAGGGGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGAGCCATAACCCTACAAGCATCTGCCATGAAGGCAAAGGGGGAA  392

seq1  AATATTGCAGTGAGCAAAGAAGAGTGTGGGATGATCATTACAGAGCCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCAGTGAGCAAAGAAGAGTGTGGGATGATCATTACAGAGCCTCT  442

seq1  TACTATAAACCAGTGCTTCCCGAGTTTGCCTGGGAATAGAAATCACCAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAACCAGTGCTTCCCGAGTTTGCCTGGGAATAGAAATCACCAAG  492

seq1  CTTTGCTTCAATAAAAATTCTTGGCACACACTCCACATCTGCTGAATCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCAATAAAAATTCTTGGCACACACTCCACATCTGCTGAATCAA  542

seq1  ACTGAGCAGGGGAAGAACCAGAGAAACAACTGTATGGTGAAGAAAACTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAGGGGAAGAACCAGAGAAACAACTGTATGGTGAAGAAAACTCC  592

seq1  CTGCACTTTGCTACGATTGTCCAAGGGAGACCATCTCAGCCTACAAGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTTGCTACGATTGTCCAAGGGAGACCATCTCAGCCTACAAGCTT  642

seq1  GGAAACCGTCAAATGCACATTCTGCCGGTTCTGCAAGATTCTAACGGGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCGTCAAATGCACATTCTGCCGGTTCTGCAAGATTCTAACGGGCC  692

seq1  TTGGGTAAAGCTCCTCTACTGATCCCCAGGGGCAGAAAAATAACCAGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAAGCTCCTCTACTGATCCCCAGGGGCAGAAAAATAACCAGAAA  742

seq1  TCACTGTGGCAGGAGCTCAGACATTCTACCCCGCAAGTATACCTACTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGGCAGGAGCTCAGACATTCTACCCCGCAAGTATACCTACTCTC  792

seq1  AGAAAAAGAAGAGGCAGTAGCCAAGCTGTGGTCATTTGTCTCTTTGCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAGAGGCAGTAGCCAAGCTGTGGTCATTTGTCTCTTTGCTTA  842

seq1  ATCTTCAACCTAAGTGGCTTATGGAGAGATCAAGAGGACAGGAGTGAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAACCTAAGTGGCTTATGGAGAGATCAAGAGGACAGGAGTGAAGG  892

seq1  ACTCTCATCCAAGGTCACATCCAGCCTACCCATAAGTAAGGCTACTTAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATCCAAGGTCACATCCAGCCTACCCATAAGTAAGGCTACTTAAG  942

seq1  GCCCCGGAATAGCTTCTCTTCCCTTAGAGATAACTAAGCTTTAGGAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGAATAGCTTCTCTTCCCTTAGAGATAACTAAGCTTTAGGAAATT  992

seq1  GCTGTGCATTTAATCTCATAGAGTTTCAAGCCAAGGAAGCCCACCTCACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCATTTAATCTCATAGAGTTTCAAGCCAAGGAAGCCCACCTCACT  1042

seq1  GCCCATGGCTGCACACAACTGGAATTC  1075
      |||||||||||||||||||||||||||
seq2  GCCCATGGCTGCACACAACTGGAATTC  1069

seq1: chrX_158289636_158289918
seq2: B6Ng01-008H22.g_76_358

seq1  TCATATAAGAGAGTGGAATATGTAAACTAGAGGAACAATTCATAGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAGAGAGTGGAATATGTAAACTAGAGGAACAATTCATAGAAGCA  50

seq1  ATTGAAAGGGAGCCTCAATATGTCAAGTTGATATGGGAAAGAAAATTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGGAGCCTCAATATGTCAAGTTGATATGGGAAAGAAAATTGCT  100

seq1  ACAAAAATTCAAGGCTTTGTATCTCATAAAGAAATTTTCAAAAAAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTCAAGGCTTTGTATCTCATAAAGAAATTTTCAAAAAAATAAG  150

seq1  AGACTGCAGTTCAGGCAACATGAATGAAATTTATATTGACAAATGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCAGTTCAGGCAACATGAATGAAATTTATATTGACAAATGAATTT  200

seq1  TGTAGTTCATCATAAATCTCTCAAGTCAGCTCTTCTGCTGAGTATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCATCATAAATCTCTCAAGTCAGCTCTTCTGCTGAGTATTTTTT  250

seq1  AGGAGTGAGAGATGAGGAGTGGGTTTTATTTTT  283
      |||||||||||||||||||||||||||||||||
seq2  AGGAGTGAGAGATGAGGAGTGGGTTTTATTTTT  283