BAC Information

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BAC

Clone NameB6Ng01-009B05
Chromosome7 (Build37)X (Build37)
Map Location 16,480,931 - 16,481,950105,554,186 - 105,554,735
singlet/doubletsingletsinglet
Overlap geneCrxos1
Upstream geneLOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx
Downstream geneSepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B05.bB6Ng01-009B05.g
ACCDH845118DH845119
length1,024908
definitionDH845118|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B05, 5' end.DH845119|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,480,931 - 16,481,950)(105,554,186 - 105,554,735)
sequence
gaattcatatgagtctgcaaacatttcccttgctaatacagtagcctcaa
cctaagcagataggttttttggaggaatccgaccaagagcctcataatta
gctgctgttacattggttctcccttccttaattgtggaccctggaggagc
caaagtgcctggggttcagaccagctctcttgacaccaccacatagaccc
ccaactccactgtcatggccttactttctacaagacccggtctgctcttt
gggccaaaagggaaatgcaaacccaggcctcaccatagcaatcctgtcca
cccgacagacttcatgtaacagggtttttagggcccagacttactcaggg
aacgtggagatgcttccatttcgcctgtagctcacttcagttgtgattga
aggtatgctctaaggatttaggattcaaactgagcttcaagttgggcgca
ctgagcagggaccctccaacctgtagcccctcccacaatttagcatccag
ccaagaggaagggcaggctccacccagtgtctcctttgtaggaggaaatg
gactccagccagatacccaggtgttcttccccattctttcccgaatctgc
ttgcttctcctctatgtcaaagcaccatcctagtgtgtcaggggcccgcc
ctggccgtccatttgtcctgattaccagacaacctctaagattactaagg
tgtctgcccttgtaggcttgctcaggtgactgccttgatttctttggggt
tacttttaaaattagggcaaatggatattcaagggaatacatggctaatg
agtccaggaactcctttgtagaccaggctatcctccaactcagaaaacca
ctggcctctgcctcccagtgctgggattaaaggtgtgatccactttacag
gctcattgttgacatctgtttgagatgttgtcatgtgtccagggaaggtg
ggactttcaaccttgtgagtttatagtttgtgatacccagtctagctccc
tttgggggtatttttatttttttt
gaattcctgatctttccaagacttttatcctgaatgggtgttggattttg
tcaaatgctttctcagcatctaatgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacattgatggatttccgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcagttagcaagaactttattgaggatctttgc
atcgatattcataagggaaattggtctgaagttttctgtctctgttgggt
ctttttgtggtttatgtatcagagtagttgtggcttcatagaatgagttg
tgtatagtaccttctgtttctattttgtggtatagtttgtgaagaactgg
gattagatcttctttgaaggtctgatagaactctgaactaaacccatctg
gtcctggggtttttttggttgggagactattaatgactgcttctatttct
ttaggggatataggactgtttagattattaacctgatcttgatttaactt
tggtaccttgtatctgtctagaaacttgtctatttcatccaggtttttcc
agttttgttgagtatagccttttttagaaggatctgatggtgttatggat
ttcttcaggatctgttgttatgtttccctttttcatttctgatttttgtt
aattaggatgattttctcctgtaccctctagtgagtctggctaaaggttt
gtctacctttgtagatttctcaaaaaatcagctcctcgattggctgattt
ttttaatagatcttcttcattccacttggttgatttcacccctgaatttg
attatttcctgccttcactcctcttgggtgatttgcttccttttgttcta
gagatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16480931_16481950
seq2: B6Ng01-009B05.b_48_1071 (reverse)

seq1  --------AAAAAAAACCACCAAAGGGAGCTAGACTTGGTATCACAAACC  42
               ||||| ||| ||||||||||||||||| ||||||||||| |
seq2  AAAAAAAATAAAAATACCCCCAAAGGGAGCTAGACTGGGTATCACAAA-C  49

seq1  TATAAACTCACAAGGTTGAAAGTTCCAACCTTCCCTGGACAACATGACAA  92
      |||||||||||||||||||||| ||| ||||||||||||| |||||||||
seq2  TATAAACTCACAAGGTTGAAAG-TCCCACCTTCCCTGGAC-ACATGACAA  97

seq1  CATCTCAAACAGATGTCAACAATGAGCCTGTAAAGTGGATCACACCTTTA  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAACAGATGTCAACAATGAGCCTGTAAAGTGGATCACACCTTTA  147

seq1  ATCCCAGCACTGGGAGGCAGAGGCCAGTGGTTTTCTGAGTTGGAGGATAG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTGGGAGGCAGAGGCCAGTGGTTTTCTGAGTTGGAGGATAG  197

seq1  CCTGGTCTACAAAGGAGTTCCTGGACTCATTAGCCATGTATTCCCTTGAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGGAGTTCCTGGACTCATTAGCCATGTATTCCCTTGAA  247

seq1  TATCCATTTGCCCTAATTTTTAAAAGTAACCCCAAAGAAATCAAGGCAGT  292
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCCATTTGCCCTAA-TTTTAAAAGTAACCCCAAAGAAATCAAGGCAGT  296

seq1  CACCTGAGCAAGCCTACAAGGGCAGACACCTTAGTAATCTTAGAGGTTGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCAAGCCTACAAGGGCAGACACCTTAGTAATCTTAGAGGTTGT  346

seq1  CTGGTAATCAGGACAAATGGACGGCCAGGGCGGGCCCCTGACACACTAGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATCAGGACAAATGGACGGCCAGGGCGGGCCCCTGACACACTAGG  396

seq1  ATGGTGCTTTGACATAGAGGAGAAGCAAGCAGATTCGGGAAAGAATGGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTTTGACATAGAGGAGAAGCAAGCAGATTCGGGAAAGAATGGGG  446

seq1  AAGAACACCTGGGTATCTGGCTGGAGTCCATTTCCTCCTACAAAGGAGAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACCTGGGTATCTGGCTGGAGTCCATTTCCTCCTACAAAGGAGAC  496

seq1  ACTGGGTGGAGCCTGCCCTTCCTCTTGGCTGGATGCTAAATTGTGGGAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGGAGCCTGCCCTTCCTCTTGGCTGGATGCTAAATTGTGGGAGG  546

seq1  GGCTACAGGTTGGAGGGTCCCTGCTCAGTGCGCCCAACTTGAAGCTCAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGGTTGGAGGGTCCCTGCTCAGTGCGCCCAACTTGAAGCTCAGT  596

seq1  TTGAATCCTAAATCCTTAGAGCATACCTTCAATCACAACTGAAGTGAGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCTAAATCCTTAGAGCATACCTTCAATCACAACTGAAGTGAGCT  646

seq1  ACAGGCGAAATGGAAGCATCTCCACGTTCCCTGAGTAAGTCTGGGCCCTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCGAAATGGAAGCATCTCCACGTTCCCTGAGTAAGTCTGGGCCCTA  696

seq1  AAAACCCTGTTACATGAAGTCTGTCGGGTGGACAGGATTGCTATGGTGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTGTTACATGAAGTCTGTCGGGTGGACAGGATTGCTATGGTGAG  746

seq1  GCCTGGGTTTGCATTTCCCTTTTGGCCCAAAGAGCAGACCGGGTCTTGTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTTGCATTTCCCTTTTGGCCCAAAGAGCAGACCGGGTCTTGTA  796

seq1  GAAAGTAAGGCCATGACAGTGGAGTTGGGGGTCTATGTGGTGGTGTCAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGGCCATGACAGTGGAGTTGGGGGTCTATGTGGTGGTGTCAAG  846

seq1  AGAGCTGGTCTGAACCCCAGGCACTTTGGCTCCTCCAGGGTCCACAATTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTCTGAACCCCAGGCACTTTGGCTCCTCCAGGGTCCACAATTA  896

seq1  AGGAAGGGAGAACCAATGTAACAGCAGCTAATTATGAGGCTCTTGGTCGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAGAACCAATGTAACAGCAGCTAATTATGAGGCTCTTGGTCGG  946

seq1  ATTCCTCCAAAAAACCTATCTGCTTAGGTTGAGGCTACTGTATTAGCAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCAAAAAACCTATCTGCTTAGGTTGAGGCTACTGTATTAGCAAG  996

seq1  GGAAATGTTTGCAGACTCATATGAATTC  1020
      ||||||||||||||||||||||||||||
seq2  GGAAATGTTTGCAGACTCATATGAATTC  1024

seq1: chrX_105554186_105554735
seq2: B6Ng01-009B05.g_424_976 (reverse)

seq1  AAAAGCTCTAGAACAAAAGGAAGCAAATTCACCCAAGAGGAGTAGAAGGC  50
      |||| |||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AAAATCTCTAGAACAAAAGGAAGCAAA-TCACCCAAGAGGAGT-GAAGGC  48

seq1  AGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA  100
      |||||||||||||| ||||||||||||||||||||||||||  |||||||
seq2  AGGAAATAATCAAATTCAGGGGTGAAATCAACCAAGTGGAATGAAGAAGA  98

seq1  ACTATTCAAAGAATCAACCAAACAAGGAGCTGGTTCTTTGAGAAAATCAA  150
       ||||| ||| ||||| |||| | |||||||| || |||||| ||||| |
seq2  TCTATTAAAAAAATCAGCCAATCGAGGAGCTGATTTTTTGAG-AAATCTA  147

seq1  C-ACGATAGATAAAACCTTAGCCAGACTCACTAGAGGGCACAG--GGACA  197
      | | | |||| ||| | ||||||||||||||||||||| ||||  | | |
seq2  CAAAGGTAGACAAACCTTTAGCCAGACTCACTAGAGGGTACAGGAGAAAA  197

seq1  GCATCCTAATTAAC-AAAATCAGAAATG-AAAAGGGAAACATAACAACAG  245
       ||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TCATCCTAATTAACAAAAATCAGAAATGAAAAAGGGAAACATAACAACAG  247

seq1  ATCCTGAAGAAATCCATAACACCATCAGATCCTTCTACAAAAGGCTATAC  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCCTGAAGAAATCCATAACACCATCAGATCCTTCTAAAAAAGGCTATAC  297

seq1  TCAACAAAACTGG-AAAACCTGGATGAAATGGACAAGTTTCTAGACAGAT  344
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TCAACAAAACTGGAAAAACCTGGATGAAATAGACAAGTTTCTAGACAGAT  347

seq1  ACCAGGTACCAAAGCTAAATCAAGATCAGGTTAATGATCTAAGACGTCTT  394
      || ||||||||||| |||||||||||||||||||| ||||||   ||| |
seq2  ACAAGGTACCAAAGTTAAATCAAGATCAGGTTAATAATCTAAACAGTCCT  397

seq1  ATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAA  447

seq1  AAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTGTCAGACCTTCAAAG  494
      || |||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AACCCCAGGACCAGATGGGTTTAGTTCAGAGTTCTATCAGACCTTCAAAG  497

seq1  AAGACCTAATTCCAGTTCTTCACAAACTATTCCACAAAATAGAAACGGAA  544
      |||| ||||| ||||||||||||||||||| ||||||||||||||| |||
seq2  AAGATCTAATCCCAGTTCTTCACAAACTATACCACAAAATAGAAACAGAA  547

seq1  GGTACT  550
      ||||||
seq2  GGTACT  553