BAC Information

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BAC

Clone NameB6Ng01-009I22
ChromosomeX (Build37)
Map Location 139,500,244 - 139,630,303
singlet/doubletdoublet
Overlap geneRgag1, LOC209541
Upstream geneGucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1
Downstream geneChrdl1, Pak3, Capn6, Dcx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I22.bB6Ng01-009I22.g
ACCDH845467DH845468
length1,1341,137
definitionDH845467|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I22, 5' end.DH845468|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,500,244 - 139,501,364)(139,629,153 - 139,630,303)
sequence
gaattctacatttctttctgtggtgggggtggcacccagggccctgtgcc
cattgagcatgcagtataccactaagctcccttgtctttgacagcaatgt
ttcttttttctttttctttttttcaacctggctgtccttctcatggactt
ggagcttcccgagtccagcgactgagatttcttccagttcccctgaactt
gttccagaataggtcccgtcaatatttgtggatggaatgaaacctcataa
gggagtgagtgggtcgctgttaccttcttttcttcgggcttcggcattac
aggtttctgtttatttccctggtgcagggtagcactggggaccaaagtgg
tctgggggaaggagtctctctgaccacagggtacaaggagcaccagttct
gcttaggccaacctgtgtttttaagagcacagtgcttgatccaaaggatt
tcattttgtcgtcagtctaaaaagtggccggacctgtttaggacttaaac
aaactttcagtgttcaaatcctatctcaaatcctttgcagaactacgcag
ggtgtggggaggcagagagaggggaggtataaataaacaaatacccacaa
actggctggctttttaaacagaatttgcttcaatcagtgctgtgcctccg
tcgtgagaacaagtgggaactttcatactgaatggttttagccccccccc
cactccccctccccggccagatgaatggcagtttttggctggggaggcag
gtttccaatcccagcccacagttagctgccctactgtgccccatccatca
cacacagggctctgaaacgacacaacccagtcgttgtatctgctgctcca
gggctctcagaaataattgggtcattgtttcattacactagcgagagggc
tgcgagccgttcggattatgtcactgatattttcgtgaaaaggcaatcat
gatatgctgttcattggaacacagcttgggaatgcaactccgttatttat
ttgaggttcctccaccgtgtgctaaatagtcccgggccactggtggatgc
atctccgtgttgcttggcttggcttgacacctttgcaccacctccctcat
gcgtgaaagccaggtacgggatagaacctttgtt
gaattcccagaatcctatggaatcataaaagaggaagtaaacaacttggt
atacaaaaatagcaggagatttcacaaggaatgtgcatttgagatggatt
ttggaagagaaaatgattcccccaaggaaacaatgagttaggttgacata
ctaagtctccaaaatctgaatgtttcaaaggagagtctagctgaacagca
gaacacactgaggcagggaagacatgacaggttcaggcaccgatgagaag
gaaaacaaatcagagcactgtatgaatatagatgtctatgtgatcccagg
caccatcgtgtttggaaatgtccagaagattaggataggataacatgaga
aagtctcctttatgacatcaatccaagcaaatcctcttacaagaaaacca
ggggtcaagaaatgaaggctgtgacctcaggtcctactgccattacgtct
gaattctctgacccacaaccctgtaccctttccattaacattctcactcc
tcatccctcggggaaaatccaaccaagtgagtggtcttgccctcacccct
cccattctcagaggttgctcttctgggcaaccatccacaagctgtgctct
gcagctgtggcctatgaacaccttccaggatacgaaatcccaggggccag
gagtcggagggaaagagcaaccacctgcatgttctgttgtgtctgattaa
tttcaaatgaatcttccagggtttcagatgttcctggacagctctgcaac
atcctgcaattagcctaaatggatgggctccatgaaaggaagatggaatg
aggatgactctaatggcagaggtgaagaagagtaagtaaaaccatagcct
gaactctgagatcaccccggtaccaaggccttgtgtaacagatgagaaac
tgagttcaaaaaggtcgtggtttgtcttacgtcagagtgagtcagtagca
cagacagggcctcgggctcaattcccagcccactgctctttcactattct
atcaagcatctagaccagtggaagaagatactgaggctactgatgaaggg
aagaggtgagccattcaaggctgggaggctcacctgcggcaaatgttacg
aacaagggccagtcacatgctttctgtttatagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_139500244_139501364
seq2: B6Ng01-009I22.b_47_1180

seq1  GAATTCTACATTTCTTTCTGTGGTGGGGGTGGCACCCAGGGCCCTGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTCTTTCTGTGGTGGGGGTGGCACCCAGGGCCCTGTGCC  50

seq1  CATTGAGCATGCAGTATACCACTAAGCTCCCTTGTCTTTGACAGCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCATGCAGTATACCACTAAGCTCCCTTGTCTTTGACAGCAATGT  100

seq1  TTCTTTTTTCTTTTTCTTTTTTTCAACCTGGCTGTCCTTCTCATGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCTTTTTCTTTTTTTCAACCTGGCTGTCCTTCTCATGGACTT  150

seq1  GGAGCTTCCCGAGTCCAGCGACTGAGATTTCTTCCAGTTCCCCTGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCCCGAGTCCAGCGACTGAGATTTCTTCCAGTTCCCCTGAACTT  200

seq1  GTTCCAGAATAGGTCCCGTCAATATTTGTGGATGGAATGAAACCTCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAATAGGTCCCGTCAATATTTGTGGATGGAATGAAACCTCATAA  250

seq1  GGGAGTGAGTGGGTCGCTGTTACCTTCTTTTCTTCGGGCTTCGGCATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAGTGGGTCGCTGTTACCTTCTTTTCTTCGGGCTTCGGCATTAC  300

seq1  AGGTTTCTGTTTATTTCCCTGGTGCAGGGTAGCACTGGGGACCAAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGTTTATTTCCCTGGTGCAGGGTAGCACTGGGGACCAAAGTGG  350

seq1  TCTGGGGGAAGGAGTCTCTCTGACCACAGGGTACAAGGAGCACCAGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGAAGGAGTCTCTCTGACCACAGGGTACAAGGAGCACCAGTTCT  400

seq1  GCTTAGGCCAACCTGTGTTTTTAAGAGCACAGTGCTTGATCCAAAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGCCAACCTGTGTTTTTAAGAGCACAGTGCTTGATCCAAAGGATT  450

seq1  TCATTTTGTCGTCAGTCTAAAAAGTGGCCGGACCTGTTTAGGACTTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTCGTCAGTCTAAAAAGTGGCCGGACCTGTTTAGGACTTAAAC  500

seq1  AAACTTTCAGTGTTCAAATCCTATCTCAAATCCTTTGCAGAACTACGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCAGTGTTCAAATCCTATCTCAAATCCTTTGCAGAACTACGCAG  550

seq1  GGTGTGGGGAGGCAGAGAGAGGGGAGGTATAAATAAACAAATACCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGGAGGCAGAGAGAGGGGAGGTATAAATAAACAAATACCCACAA  600

seq1  ACTGGCTGGCTTTTTAAACAGAATTTGCTTCAATCAGTGCTGTGCCTCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGGCTTTTTAAACAGAATTTGCTTCAATCAGTGCTGTGCCTCCG  650

seq1  TCGTGAGAACAAGTGGGAACTTTCATACTGAATGGTTTTAGCCCCCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGAACAAGTGGGAACTTTCATACTGAATGGTTTTAGCCCCCCCCC  700

seq1  CACTCCCCCTCCCCGGCCAGATGAATGGCAGTTTTTGGCTGGGGAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCCTCCCCGGCCAGATGAATGGCAGTTTTTGGCTGGGGAGGCAG  750

seq1  GTTTCCAATCCCAGCCCACAGTTAGCTGCCCTACTGTGCCCCATCCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAATCCCAGCCCACAGTTAGCTGCCCTACTGTGCCCCATCCATCA  800

seq1  CACACAGGGCTCTG-AACGACAC-ACCCAGTCGTTGTATCTGCTGCTCCA  848
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  CACACAGGGCTCTGAAACGACACAACCCAGTCGTTGTATCTGCTGCTCCA  850

seq1  GGGCTCTCAGAAATAATTGGGTCATTGTTTCATTACACTAGCGAGAGGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCAGAAATAATTGGGTCATTGTTTCATTACACTAGCGAGAGGGC  900

seq1  TGCGAGCCCGTTCGGATTATGTCACTGATATTTTCGTGAAAAGGCAATCA  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAG-CCGTTCGGATTATGTCACTGATATTTTCGTGAAAAGGCAATCA  949

seq1  TGATATGCTGTTCATT-GAACACAGC-TGGGAATGCAACTCCGTTA-TTA  995
      |||||||||||||||| ||||||||| ||||||||||||||||||| |||
seq2  TGATATGCTGTTCATTGGAACACAGCTTGGGAATGCAACTCCGTTATTTA  999

seq1  TTTGAGG-TCCTCCACCGT-TGCTAAATAG--CCCGGCCACT-GTGAATG  1040
      ||||||| ||||||||||| ||||||||||  || ||||||| ||| |||
seq2  TTTGAGGTTCCTCCACCGTGTGCTAAATAGTCCCGGGCCACTGGTGGATG  1049

seq1  CATCTCCGTGTTGCTT-GCTT-GCCTGGCACCTTTGCAACACCT-CCTCA  1087
      |||||||||||||||| |||| || || |||||||||| ||||| |||||
seq2  CATCTCCGTGTTGCTTGGCTTGGCTTGACACCTTTGCACCACCTCCCTCA  1099

seq1  TGCGTTGAAAGCCCAAG--CAGGATAGAA-CTTTGTT  1121
      |||| |||||| ||| |  | |||||||| |||||||
seq2  TGCG-TGAAAG-CCAGGTACGGGATAGAACCTTTGTT  1134

seq1: chrX_139629153_139630303
seq2: B6Ng01-009I22.g_67_1203 (reverse)

seq1  AAAGACTATAAACAGAAAGCATGTGACTGGCCCTTGTCTGTAACATTTTG  50
      |||| ||||||||||||||||||||||||||||||||  |||||||||  
seq2  AAAG-CTATAAACAGAAAGCATGTGACTGGCCCTTGTTCGTAACATTT--  47

seq1  GCTGCATGTTGAGCTTCCCAGCCTTGGAATGGCTCA-CTCTTTCCTTCAT  99
      || ||| | ||||| |||||||||| |||||||||| ||||| |||||||
seq2  GCCGCA-GGTGAGCCTCCCAGCCTT-GAATGGCTCACCTCTTCCCTTCAT  95

seq1  CAGTAGCCTTCAGTATTCTTCTTCCAACTGGTCTAGATGCTTGATTAGAA  149
      |||||||| |||||| ||||||||| |||||||||||||||||| |||||
seq2  CAGTAGCC-TCAGTA-TCTTCTTCC-ACTGGTCTAGATGCTTGA-TAGAA  141

seq1  TAGTGGAAAGAGCAGTGGGCTGGGAATTGAGGCCCGGAGGCCCTGTCTGT  199
      |||| ||||||||||||||||||||||||||  || ||||||||||||||
seq2  TAGT-GAAAGAGCAGTGGGCTGGGAATTGAG--CCCGAGGCCCTGTCTGT  188

seq1  GCTACTGACTCACTCTGACGTAAGACAAACCACGACCCTTTTTTGAACCT  249
      |||||||||||||||||||||||||||||||||||||  |||||||| ||
seq2  GCTACTGACTCACTCTGACGTAAGACAAACCACGACC--TTTTTGAA-CT  235

seq1  CAGTTTTCTCATCTGTTACACAAGGCCTTGGTACCGGGGTGATCTCAGAG  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-TTTCTCATCTGTTACACAAGGCCTTGGTACCGGGGTGATCTCAGAG  284

seq1  TTCAGGCTATGGTTTTACTTACTCTTCTTCACCTCTGCCATTAGAGTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTATGGTTTTACTTACTCTTCTTCACCTCTGCCATTAGAGTCAT  334

seq1  CCTCATTCCATCTTCC-TTCATGGAGCCCATCCATTTAGGCTAATTGCAG  398
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTCATTCCATCTTCCTTTCATGGAGCCCATCCATTTAGGCTAATTGCAG  384

seq1  GATGTTGCAGAGCTGTCCAGGAACATCTGAAACCCTGGAAGATTCATTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGCAGAGCTGTCCAGGAACATCTGAAACCCTGGAAGATTCATTTG  434

seq1  AAATTAATCAGACACAACAGAACATGCAGGTGGTTGCTCTTTCCCTCCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATCAGACACAACAGAACATGCAGGTGGTTGCTCTTTCCCTCCGA  484

seq1  CTCCTGGCCCCTGGGATTTCGTATCCTGGAAGGTGTTCATAGGCCACAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCCCTGGGATTTCGTATCCTGGAAGGTGTTCATAGGCCACAGC  534

seq1  TGCAGAGCACAGCTTGTGGATGGTTGCCCAGAAGAGCAACCTCTGAGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCACAGCTTGTGGATGGTTGCCCAGAAGAGCAACCTCTGAGAAT  584

seq1  GGGAGGGGTGAGGGCAAGACCACTCACTTGGTTGGATTTTCCCCGAGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTGAGGGCAAGACCACTCACTTGGTTGGATTTTCCCCGAGGGA  634

seq1  TGAGGAGTGAGAATGTTAATGGAAAGGGTACAGGGTTGTGGGTCAGAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTGAGAATGTTAATGGAAAGGGTACAGGGTTGTGGGTCAGAGAA  684

seq1  TTCAGACGTAATGGCAGTAGGACCTGAGGTCACAGCCTTCATTTCTTGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACGTAATGGCAGTAGGACCTGAGGTCACAGCCTTCATTTCTTGAC  734

seq1  CCCTGGTTTTCTTGTAAGAGGATTTGCTTGGATTGATGTCATAAAGGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTTCTTGTAAGAGGATTTGCTTGGATTGATGTCATAAAGGAGA  784

seq1  CTTTCTCATGTTATCCTATCCTAATCTTCTGGACATTTCCAAACACGATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCATGTTATCCTATCCTAATCTTCTGGACATTTCCAAACACGATG  834

seq1  GTGCCTGGGATCACATAGACATCTATATTCATACAGTGCTCTGATTTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGGATCACATAGACATCTATATTCATACAGTGCTCTGATTTGTT  884

seq1  TTCCTTCTCATCGGTGCCTGAACCTGTCATGTCTTCCCTGCCTCAGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCATCGGTGCCTGAACCTGTCATGTCTTCCCTGCCTCAGTGTG  934

seq1  TTCTGCTGTTCAGCTAGACTCTCCTTTGAAACATTCAGATTTTGGAGACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTTCAGCTAGACTCTCCTTTGAAACATTCAGATTTTGGAGACT  984

seq1  TAGTATGTCAACCTAACTCATTGTTTCCTTGGGGGAATCATTTTCTCTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTCAACCTAACTCATTGTTTCCTTGGGGGAATCATTTTCTCTTC  1034

seq1  CAAAATCCATCTCAAATGCACATTCCTTGTGAAATCTCCTGCTATTTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCATCTCAAATGCACATTCCTTGTGAAATCTCCTGCTATTTTTG  1084

seq1  TATACCAAGTTGTTTACTTCCTCTTTTATGATTCCATAGGATTCTGGGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAAGTTGTTTACTTCCTCTTTTATGATTCCATAGGATTCTGGGAA  1134

seq1  TTC  1151
      |||
seq2  TTC  1137