BAC Information

Click to search

BAC

Clone NameB6Ng01-009J12
Chromosome8 (Build37)X (Build37)
Map Location 9,554,531 - 9,555,099135,103,850 - 135,104,526
singlet/doubletsingletsinglet
Overlap geneTmem28
Upstream geneEfnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009J12.bB6Ng01-009J12.g
ACCDH845493DH845494
length893908
definitionDH845493|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J12, 5' end.DH845494|Mus musculus domesticus DNA, BAC clone: B6Ng01-009J12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,554,531 - 9,555,099)(135,103,850 - 135,104,526)
sequence
gaattctgcactaaacccgtctggtcctgggctttttttggctgggagac
tattaataactgcttctatttctttaggggatatgggactgtttagatgg
ttaacttgatccttatttaactttggtacctggtatctgtccagaaattt
gtccatttcgtccaggttttccagttttgttgagtatagccttttgtaga
aggatctgatggtgttttggatttcttcaggatctgttgttatgtctccc
ttttcatttctgattttgttaattaggattttgtccctgtgccctctagt
gagtctagctaagggtttatctatcttgttgattttctcaaagaaccaac
tcctcgtttggttaattctttgaatagttcttgtttccacttggttgatt
tcacccctgagtttgattatttcctgctgtctactcctcttgggtgaatt
ttcttacttttttttctagagcttttagatgtgttgtcaagctgctagtg
tgtgctctctccagtttcttcttggaggcactcggagctatgagtttccc
tcttagaaatgctttcattgtgtcccataagtttgggtatgttgtggctt
cattttcattaaactctaaaaagtctttaatttctttctttatttcatcc
ttgatcaaggtatcattgagaatagtgttattcagtttccatgtgaaagt
tggctctatttggactttaaatagggacatcattcctggtattgaaaatt
tagccaactcctcaagaatagagtggttatatgtcttgaaggagaatcta
gaaatgtgcactttacttaaccagtatttctaactgcatttctaaatatt
tatccatatgtctgcacataaaatgtagctatctttctctctt
gaattcctaatgaaaatcagattagcaatctagcaacactggttctttcc
tatcttgatttcacttcttgggtacctgtcccttcacccaaattatgaac
ccagattttatataacatcaatatgtgtatttatttgttttggaatttct
atatgcatagcagcaacaatactagttattttttatattttctttgttat
tatttatttatttatttatttatttatttatttattttaatttattaaca
tttcaagtgttatccccttacctggtcttacacccccagaaaccccttat
cccatccaccctttccctgtttctattagggtgctcccctaaccactcac
ccacccaatcccacctccctgtcctggtattcccctacactggggcattc
atggagccttcataggatcaagatcatatcctcccattcataccagataa
ggccatcctctgctacatatacagctggtgccatgggcccgtccatgtat
gcattttggttggtgttttagtccgtgggagctctgggggggtctcattg
tttaatattgttgttcttcctatgggattgcaaaccccttcagctccttc
agtccattctctaaatcctccattgggaccttgcactcagtgcaatggtt
gactgtgagcagccaattctgtattggtaaggctctgacagggcctctta
ggacacagctatatcagacacctttcagcaaacatttcttagcattcaca
atagtgtcggagtttggtgactgtatctgggatgaatccccagtgggaca
gtctctggatggcctttccttcagtctctgctcatgaagttcttatttta
atagctgagtagtactccattgtgtaaatgcaccacattttctatatcca
ttcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9554531_9555099
seq2: B6Ng01-009J12.b_51_617 (reverse)

seq1  ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCCGAGTGCCTCCAA  50

seq1  GAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAG  100
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAG  100

seq1  CTCTAG-AAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGA  149
      |||||| |||||||| ||| ||||||||||||||||||||||| ||||||
seq2  CTCTAGAAAAAAAAGTAAGAAAATTCACCCAAGAGGAGTAGACAGCAGGA  150

seq1  AATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTA  199
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  AATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC---AAGAACTA  197

seq1  TTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG  247

seq1  ATAGATAAACCCTTAGCTACACTCACTAAAGGGCACAGGGACAAAATCCT  299
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCT  297

seq1  AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAG  347

seq1  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAA  397

seq1  CTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC  447

seq1  AAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTA  499
      |||||| ||| ||||||||||| ||| |||||||||||||||||||||||
seq2  AAAGTTAAATAAGGATCAAGTTAACCATCTAAACAGTCCCATATCCCCTA  497

seq1  AAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGA  547

seq1  CCAGACGGGTTTAGTGCAGA  569
      ||||||||||||||||||||
seq2  CCAGACGGGTTTAGTGCAGA  567

seq1: chrX_135103850_135104526
seq2: B6Ng01-009J12.g_66_742

seq1  GAATTCCTAATGAAAATCAGATTAGCAATCTAGCAACACTGGTTCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATGAAAATCAGATTAGCAATCTAGCAACACTGGTTCTTTCC  50

seq1  TATCTTGATTTCACTTCTTGGGTACCTGTCCCTTCACCCAAATTATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATTTCACTTCTTGGGTACCTGTCCCTTCACCCAAATTATGAAC  100

seq1  CCAGATTTTATATAACATCAATATGTGTATTTATTTGTTTTGGAATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTTATATAACATCAATATGTGTATTTATTTGTTTTGGAATTTCT  150

seq1  ATATGCATAGCAGCAACAATACTAGTTATTTTTTATATTTTCTTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATAGCAGCAACAATACTAGTTATTTTTTATATTTTCTTTGTTAT  200

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTTTAATTTATTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTTAATTTATTAACA  250

seq1  TTTCAAGTGTTATCCCCTTACCTGGTCTTACACCCCCAGAAACCCCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGTTATCCCCTTACCTGGTCTTACACCCCCAGAAACCCCTTAT  300

seq1  CCCATCCACCCTTTCCCTGTTTCTATTAGGGTGCTCCCCTAACCACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCACCCTTTCCCTGTTTCTATTAGGGTGCTCCCCTAACCACTCAC  350

seq1  CCACCCAATCCCACCTCCCTGTCCTGGTATTCCCCTACACTGGGGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAATCCCACCTCCCTGTCCTGGTATTCCCCTACACTGGGGCATTC  400

seq1  ATGGAGCCTTCATAGGATCAAGATCATATCCTCCCATTCATACCAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCTTCATAGGATCAAGATCATATCCTCCCATTCATACCAGATAA  450

seq1  GGCCATCCTCTGCTACATATACAGCTGGTGCCATGGGCCCGTCCATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCTCTGCTACATATACAGCTGGTGCCATGGGCCCGTCCATGTAT  500

seq1  GCATTTTGGTTGGTGTTTTAGTCCGTGGGAGCTCTGGGGGGGTCTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGGTTGGTGTTTTAGTCCGTGGGAGCTCTGGGGGGGTCTCATTG  550

seq1  TTTAATATTGTTGTTCTTCCTATGGGATTGCAAACCCCTTCAGCTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTGTTGTTCTTCCTATGGGATTGCAAACCCCTTCAGCTCCTTC  600

seq1  AGTCCATTCTCTAAATCCTCCATTGGGACCTTGCACTCAGTGCAATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTCTCTAAATCCTCCATTGGGACCTTGCACTCAGTGCAATGGTT  650

seq1  GACTGTGAGCAGCCAATTCTGTATTGG  677
      |||||||||||||||||||||||||||
seq2  GACTGTGAGCAGCCAATTCTGTATTGG  677