BAC Information

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BAC

Clone NameB6Ng01-010K15
Chromosome13 (Build37)X (Build37)
Map Location 60,279,458 - 60,279,620153,997,782 - 153,998,317
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1
Downstream geneEG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010K15.bB6Ng01-010K15.g
ACCDH846265DH846266
length309528
definitionDH846265|Mus musculus domesticus DNA, BAC clone: B6Ng01-010K15, 5' end.DH846266|Mus musculus domesticus DNA, BAC clone: B6Ng01-010K15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,279,458 - 60,279,620)(153,997,782 - 153,998,317)
sequence
tcttgaagaagacccaagtttgcgttcctaatacccatgttgggcaactc
acaagtgcctttcactccaggtccagattcaatgcacagctcacttgctc
tctgtctctgtctctctgtctctctctcaatcgctctcagtctctctctc
tctctctctctctctctctctctctctctctctctctctgtgtctctgtg
tatccctctcaatctctctctcacgcgcgcgcacacacacacacacacac
taaaaataaatcttttttaaacaatttttattagatattttcttcattta
catttcaaa
actttgtagaccaggctcgaactcagaaatctgcctcccagtgctgggaa
ttaaaggcgtgcaccaccacgcctggcaaatccaaactttttttttttta
attgcaggaatgcctgatgcttctacggggaccaaatccaaactttttaa
ctgaaggaaaaataataaaaggccaacaaaccactctccagtggatggcc
ccacatccagaagtatagagctactcagcacaaattggagtccaagggct
aggttagcaaattaaagggaaaaatgggggacatgaagttgtaggagatg
acagggaggtggggtagatctgggaggagttaaaaagaggagtaaatatg
atcaaaataccctacataaacttctcaaagaatatttttaaaatttagaa
cgaaaatattttatgcattaattacttaaataaatctgtaaaactaaact
aattgaatattatgtacctttgtatataaactaatgctgtgatgctaaac
ataaataatatagctggatgtggtacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60279458_60279620
seq2: B6Ng01-010K15.b_146_296

seq1  CTCTCTGTCTCTGTCTCTGTCTGTCTCTCTCTGTCTCTCTCTCTGTCTGT  50
      |||||||||||||||||  |||||||||||||   || ||||| |||| |
seq2  CTCTCTGTCTCTGTCTC--TCTGTCTCTCTCTCAATCGCTCTCAGTCTCT  48

seq1  CTCTCTCTCTGTCTCTCTCTGTCTGTCTCTCTCTCTGTCTCTCTCTCTCT  100
      |||||||||| ||||          ||||||||||| |||||||||||||
seq2  CTCTCTCTCTCTCTC----------TCTCTCTCTCTCTCTCTCTCTCTCT  88

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA  150
      |||| | ||||| | | || |||||  |||||||||| | | | | ||||
seq2  CTCTGTGTCTCTGTGTATCCCTCTCAATCTCTCTCTCACGCGCGCGCACA  138

seq1  CACACACACACAC  163
      |||||||||||||
seq2  CACACACACACAC  151

seq1: chrX_153997782_153998317
seq2: B6Ng01-010K15.g_68_601

seq1  GAATTCACTTTGTAGACCAGGCTCGAACTCAGAAATCTGCCTCCCAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTCGAACTCAGAAATCTGCCTCCCAGTGC  50

seq1  TGGGAATTAAAGGCGTGCACCACCACGCCTGGCAAATCCAAACTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTAAAGGCGTGCACCACCACGCCTGGCAAATCCAAACTTTTTTT  100

seq1  TTTTTAATTGCAGGAATGCCTGATGCTTCTACGGGGACCAAATCCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGCAGGAATGCCTGATGCTTCTACGGGGACCAAATCCAAACT  150

seq1  TTTTAACTGAAGGAAAAATAATAAAAGGCCAACAAACCACTCTCCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGAAGGAAAAATAATAAAAGGCCAACAAACCACTCTCCAGTGG  200

seq1  ATGGCCCCACATCCAGAAGTATAGAGCTACTCAGCACAAATTGGAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCACATCCAGAAGTATAGAGCTACTCAGCACAAATTGGAGTCCA  250

seq1  AGGGCTAGGTTAGCAAATTAAAGGGAAAAATGGGGGACATGAAGTTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGGTTAGCAAATTAAAGGGAAAAATGGGGGACATGAAGTTGTAG  300

seq1  GAGATGACAGGGAGGTGGGGTAGATCTGGGAGGAGTTAAAAAGAGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACAGGGAGGTGGGGTAGATCTGGGAGGAGTTAAAAAGAGGAGTA  350

seq1  AATATGATCAAAATACCCTACATAAACTTCTCAAAGAATATTTTTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATCAAAATACCCTACATAAACTTCTCAAAGAATATTTTTAAAAT  400

seq1  TAAAAACAAAAATATTTTATGTATAAAATACATAAATAAATCTTTAAAAC  450
      | | ||| ||||||||||||| || || ||| ||||||||||| ||||||
seq2  TTAGAACGAAAATATTTTATGCATTAATTACTTAAATAAATCTGTAAAAC  450

seq1  TAAACAAACTGAACAAAAATGTACCTAATGAATATAAACAAATGCTGTCA  500
      ||||| || ||||  |  ||||||||  || |||||||| |||||||| |
seq2  TAAACTAATTGAA-TATTATGTACCT-TTGTATATAAACTAATGCTGTGA  498

seq1  TTCTAAGCATAAATAAATAAGCTGGATGTGGTACCA  536
      | |||| |||||||||   |||||||||||||||||
seq2  TGCTAAACATAAATAATATAGCTGGATGTGGTACCA  534