BAC Information

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BAC

Clone NameB6Ng01-010L06
ChromosomeX (Build37)
Map Location 123,303,826 - 123,325,705
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679
Downstream gene4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L06.bB6Ng01-010L06.g
ACCDH846294DH846295
length1,110816
definitionDH846294|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L06, 5' end.DH846295|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,324,560 - 123,325,705)(123,303,826 - 123,304,642)
sequence
gaattcttccatcttaatacatttttctataaattttgtcaattttctca
caaatacattcgaataaaatcttgtattttatcttaaaatgatgacctct
atcttctcaaatagtgaacatgagttttctatgttttccatttgaacagt
tggtttttccatcattttctccattttaaccacgtttttctggagatgtc
tattttttttttttaatcacaaatagtgtataagaacatcttgaatttta
tcagaaaatgtttctctctattttcccttaaaggaaaaatatattctgta
tgctttcctttctaccagtagttttttccaacgaatttttccattgtaag
acattttctataaattttgccaattatgtcacaaatacatttgaataaaa
atcttgtattttaccttaaaatgatgatctctactttctcaaatagtgaa
aatgagttttctatattttcaattttttccagtcgttttctccatcaatt
tcatccattgtaaacacattttttatgtttttcatttttataaactgcag
tataagaacttctcaaattttatcagaaaatgttcctctctatattatct
aataggaaaaatatgttttctaagtttttctttctaccagtagatttttc
catttaattcttgaatttcaacacagttttctcaccaatacatttgaaaa
aaatcttttgtttcatcttacaatgatgatctttactttctcaagtcgtg
aacatgagttttccttgtattgaatttgaccagttgttttttccattatt
tcttaaattttaaccaatttttttaataattttaattttttatcaaaatg
ttgtataagaacatgtggaattttatcagaaaatgttttctccattatca
gtaataggacaaatagttttatatgttttcctttctacctgtactgttcc
aacgaattttccattttgaaatttttcataatatgtcattaggcatacta
cattgagaaatcctgtatttttcataatgatgatccttactttcatagtg
acatgagtttctccgtttcatttaccatgtagttttcataattcctccat
ttaccacatt
gaattctttggaaaacactactggtagaaaggaatgcgtattaaacatat
ttttctaataggagaaaattgagagaaacattatttgatgaaattcgaga
tgttctaatacattatttctgataaaaatgtaagaaaactacaggaaaaa
atgtggttaaaatggatgaaattgatggaaaaacaggctgttcaaatgga
aaacttagaaaattcatgttcactattttcaaaactatagatcatcatat
tacgataaaataaaagattatattcgaatgtatttgtgacaaaattgaaa
aaaaatattttaaaaacgtgttaaaatggaaataatagattgaaaaatca
ccgggtaaagaggaaaacgtagaaaacatattctttttcattagagaaaa
aggagagaaacattttctgataaatttcgagatgttcttatacactattt
ctgataaaagtgaaaactgtacagaaaaatgtggttaaaatggaggaaat
tgattgaaaaacgattggtcaaatcgaaaatggagaaaactcatgttcac
tatgagagacagctgaggtcatcattgtaagataggggagtgcgagggag
ggtatgggggacttttgggatagaattggaaacgtaattgaggaaaatac
ctaatttaaagaaatacaagatgttatttcaaatatattttttgagaaaa
attgacaaaatttaagaaaaatgttttatgatggaacatttccatggaaa
aacctttattaaaagagaaaacaaatgaaagaatttttcctaaaaagaaa
atggaataaaatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_123324560_123325705
seq2: B6Ng01-010L06.b_44_1153 (reverse)

seq1  AATGTGGTTAAAATGGAGGAAATTAATGAAAAAACTAACTGGTGAAATGG  50
      ||||||||  |||||||||||  | |||  |||||||  |||| ||||| 
seq2  AATGTGGT--AAATGGAGGAA--TTATG--AAAACTACATGGT-AAATG-  42

seq1  AAAACGGAGAAAACTCATGTTCACTATTTGAAAAAGTAGAGATCATCAAT  100
       |||||||| ||||||||| |||||||     ||||||  ||||||||  
seq2  -AAACGGAG-AAACTCATG-TCACTAT----GAAAGTAAGGATCATCA--  83

seq1  TTATGATAAAATACAAGATTTTCTTCAAATGTAGTTATGGCATAATTGAC  150
      |||||| |||||||| || |||||   ||||||| ||| || ||| ||||
seq2  TTATGA-AAAATACAGGA-TTTCT--CAATGTAG-TAT-GCCTAA-TGAC  126

seq1  ATAATTTATAGAAAAATATATCAAAATGGAAAAATTCGTTGGAAACAGTA  200
      |||  |||| |||||  || ||||||||| |||||||||||| |||||||
seq2  ATA--TTAT-GAAAA--ATTTCAAAATGG-AAAATTCGTTGG-AACAGTA  169

seq1  CAGGTAGAAAGGAAAACATATAAAACTATTTTGTCCTATTACTGATAATG  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGGTAGAAAGGAAAACATATAAAACTA-TTTGTCCTATTACTGATAATG  218

seq1  GAGAAAAACATTTTCTGATAAAATTCCACATGTTCTTATACAACATTTTT  300
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAG-AAAACATTTTCTGATAAAATTCCACATGTTCTTATACAACA-TTTT  266

seq1  GATAAAAAAATTAAAATTATTAAAAAAATTGGTTAAAATTTAAGAAATTA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAT-AAAAAATTAAAATTATTAAAAAAATTGGTTAAAATTTAAGAAA-TA  314

seq1  ATGGAAAAAACAACTGGTCAAATTCAATACAAGGAAAACTCATGTTCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAACAACTGGTCAAATTCAATACAAGGAAAACTCATGTTCACG  364

seq1  ACTTGAGAAAGTAAAGATCATCATTGTAAGATGAAACAAAAGATTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAAGTAAAGATCATCATTGTAAGATGAAACAAAAGATTTTTTT  414

seq1  CAAATGTATTGGTGAGAAAACTGTGTTGAAATTCAAGAATTAAATGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTATTGGTGAGAAAACTGTGTTGAAATTCAAGAATTAAATGGAAA  464

seq1  AATCTACTGGTAGAAAGAAAAACTTAGAAAACATATTTTTCCTATTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTGGTAGAAAGAAAAACTTAGAAAACATATTTTTCCTATTAGAT  514

seq1  AATATAGAGAGGAACATTTTCTGATAAAATTTGAGAAGTTCTTATACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGAGGAACATTTTCTGATAAAATTTGAGAAGTTCTTATACTGC  564

seq1  AGTTTATAAAAATGAAAAACATAAAAAATGTGTTTACAATGGATGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAAAAATGAAAAACATAAAAAATGTGTTTACAATGGATGAAATT  614

seq1  GATGGAGAAAACGACTGGAAAAAATTGAAAATATAGAAAACTCATTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAAAACGACTGGAAAAAATTGAAAATATAGAAAACTCATTTTCA  664

seq1  CTATTTGAGAAAGTAGAGATCATCATTTTAAGGTAAAATACAAGATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGAGAAAGTAGAGATCATCATTTTAAGGTAAAATACAAGATTTTT  714

seq1  ATTCAAATGTATTTGTGACATAATTGGCAAAATTTATAGAAAATGTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATGTATTTGTGACATAATTGGCAAAATTTATAGAAAATGTCTTA  764

seq1  CAATGGAAAAATTCGTTGGAAAAAACTACTGGTAGAAAGGAAAGCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAAAATTCGTTGGAAAAAACTACTGGTAGAAAGGAAAGCATACA  814

seq1  GAATATATTTTTCCTTTAAGGGAAAATAGAGAGAAACATTTTCTGATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTTTTCCTTTAAGGGAAAATAGAGAGAAACATTTTCTGATAAA  864

seq1  ATTCAAGATGTTCTTATACACTATTTGTGATTAAAAAAAAAAAATAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGATGTTCTTATACACTATTTGTGATTAAAAAAAAAAAATAGACA  914

seq1  TCTCCAGAAAAACGTGGTTAAAATGGAGAAAATGATGGAAAAACCAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAAAAACGTGGTTAAAATGGAGAAAATGATGGAAAAACCAACTG  964

seq1  TTCAAATGGAAAACATAGAAAACTCATGTTCACTATTTGAGAAGATAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGAAAACATAGAAAACTCATGTTCACTATTTGAGAAGATAGAG  1014

seq1  GTCATCATTTTAAGATAAAATACAAGATTTTATTCGAATGTATTTGTGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATTTTAAGATAAAATACAAGATTTTATTCGAATGTATTTGTGAG  1064

seq1  AAAATTGACAAAATTTATAGAAAAATGTATTAAGATGGAAGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGACAAAATTTATAGAAAAATGTATTAAGATGGAAGAATTC  1110

seq1: chrX_123303826_123304642
seq2: B6Ng01-010L06.g_66_881

seq1  GAATTCTTTGGAAAACACTACTGGTAGAAAGGAATGCGTATTAAACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAAACACTACTGGTAGAAAGGAATGCGTATTAAACATAT  50

seq1  TTTTCTAATAGGAGAAAATTGAGAGAAACATTATTTGATGAAATTCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATAGGAGAAAATTGAGAGAAACATTATTTGATGAAATTCGAGA  100

seq1  TGTTCTAATACATTATTTCTGATAAAAATGTAAGAAAACTACAGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATACATTATTTCTGATAAAAATGTAAGAAAACTACAGGAAAAA  150

seq1  ATGTGGTTAAAATGGATGAAATTGATGGAAAAACAGGCTGTTCAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTAAAATGGATGAAATTGATGGAAAAACAGGCTGTTCAAATGGA  200

seq1  AAACTTAGAAAATTCATGTTCACTATTTTCAAAACTATAGATCATCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGAAAATTCATGTTCACTATTTTCAAAACTATAGATCATCATAT  250

seq1  TACGATAAAATAAAAGATTATATTCGAATGTATTTGTGACAAAATTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATAAAATAAAAGATTATATTCGAATGTATTTGTGACAAAATTGAAA  300

seq1  AAAAATATTTTAAAAACGTGTTAAAATGGAAATAATAGATTGAAAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTAAAAACGTGTTAAAATGGAAATAATAGATTGAAAAATCA  350

seq1  CCGGGTAAAGAGGAAAACGTAGAAAACATATTCTTTTTCATTAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTAAAGAGGAAAACGTAGAAAACATATTCTTTTTCATTAGAGAAAA  400

seq1  AGGAGAGAAACATTTTCTGATAAATTTTGAGATGTTCTTATACACTATTT  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGAGAGAAACATTTTCTGATAAATTTCGAGATGTTCTTATACACTATTT  450

seq1  CTGATAAAAGTGAAAACTGTACAGAAAAATGTGGTTAAAATGGAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAAGTGAAAACTGTACAGAAAAATGTGGTTAAAATGGAGGAAAT  500

seq1  TGATTGAAAAACGATTGGTCAAATCGAAAATGGAGAAAACTCATGTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAAAACGATTGGTCAAATCGAAAATGGAGAAAACTCATGTTCAC  550

seq1  TATGAGAGACAGCTGAGGTCATCATTGTAAGATAGGGGAGTGCGAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGACAGCTGAGGTCATCATTGTAAGATAGGGGAGTGCGAGGGAG  600

seq1  GGTATGGGGGACTTTTGGGATAGAATTGGAAACGTAATTGAGGAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGGGGACTTTTGGGATAGAATTGGAAACGTAATTGAGGAAAATAC  650

seq1  CTAATTTAAAAAAAATACAAGATGTTA-TTCAAATATA-TTTTTGAG-AA  697
      ||||||| ||| ||||||||||||||| |||||||||| |||||||| ||
seq2  CTAATTT-AAAGAAATACAAGATGTTATTTCAAATATATTTTTTGAGAAA  699

seq1  AATTGACAAAATTTATAGAAAAATGTTTTATAATGGAAGAATTCGATGGA  747
      ||||||||||||||| ||||||||||||||| |||||| | ||| |||||
seq2  AATTGACAAAATTTA-AGAAAAATGTTTTATGATGGAACATTTCCATGGA  748

seq1  AAAACCTTCAGTTAGAAAGGAAAACAAAGAAAACATATTTTTCCTAATAG  797
      |||||||| | ||| ||  |||||||||  ||| | ||||||||||| | 
seq2  AAAACCTTTA-TTAAAAGAGAAAACAAATGAAAGA-ATTTTTCCTAA-AA  795

seq1  AGAAAATGG-AGAGAATCATT  817
      ||||||||| | | |||||||
seq2  AGAAAATGGAATAAAATCATT  816