BAC Information

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BAC

Clone NameB6Ng01-011E14
ChromosomeX (Build37)
Map Location 161,637,009 - 161,800,877
singlet/doubletdoublet
Overlap geneGlra2
Upstream geneBmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E14.bB6Ng01-011E14.g
ACCDH846711DH846712
length1,1571,100
definitionDH846711|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E14, 5' end.DH846712|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,799,719 - 161,800,877)(161,637,009 - 161,638,102)
sequence
gaattccagatttagtcatagcctcattggtaattatactgtttcctccc
tagagtaaaagagaaaaagaaaaaagaaaaaaaaggaaaagatgttctct
agtgggttatgacaagtggacagactccaggagatttgaaggccgagagc
ccgtctgatttatcagcctagcatctcaattctagtgtcattcctttgct
caggcagccatggtaaaggacgacactctgagcttaaactacagaaatgt
ttttcctcaaggttctggaggaaagacatctgagatcaagctgtcaacag
aattggcttcttttagagccactctctgagtgtgactttcagatggctat
cttcaatctgttcccttacattgtctttcttttgagtatgtctgtgtcct
attttttttaaaagaaagacattaatcacacttgactaaggctcacccac
tgacatcattttaccatagttacttctttaaaatcccagtgtgtaaatac
agtcacattctgagatactaggggattaaacatccaccagaggaattgga
acaagtgaaggaaagaccccgttcagcctggagtacttgatcagaatgct
acatcccgtaaggaactgtgaggaaattattttctttaaacctcagtaac
catcttcacaaaataagaaagatacattttgtctaatagaattgttgtga
agaagaacaataaatatcaaaaaggaattagataaaagaaccatacatat
caaaagtgctagaattatacctgttactcaatagactattattagtatct
gtccagtattaccacagaatcaataaaattacatataagaatgcctatat
atataaaaatactaagatatccctttcatacttactaactgaacccagac
tatgcacaatcaattctcaatatttctggtgattatttttatacaaagct
accatgaatactgaattatagaatactgaatcattacttctaaaggaaat
acagaataatgctcttgaaagcttctagccacatggatttcattactttt
caatacataacattattttatgtgcattacattaaaaacacctattaaca
tacaacaatgattttggtgaccatgacctgctacctgtcaattttacctc
aggtgag
gaattctttctattcctctcaacattttatgacatgaggatttataggag
attaaacatctaccttgctcattcccactcattctctcctatggtgattt
tgggttttgaaactagctagtaacacagcaatcacacaactccagagaag
aggcacatctagatcagctaatggaattctctcatttcttccgttgaata
aaaggaaaggaaagctcatagatgagtctgcatgcctgctataaactgac
tgcatgtattcccaaggcacaactaaggacagaagtggaagagctacttg
gaacatttatttagatgaataagctctctttggggcatagtttatgaaaa
attaaattgacagtgacagctcattgctaagtactttaacaagcccaatg
ttcaattgggatccacctaatcaattggaatcttcatagtggaaaggtaa
aaaagactaaggaagtgtcttcatattgcatccagagaaataatatgaaa
ttactggtgcctttagagttggggctctgaaggtagaggtgggaggccta
tagggagtgctggtaatgaatattgtccaccttgccatttttcttattgt
atgtaggctgatgctgtggtaccgactcatatctgactatcaacagggtg
cctgtcagtatctggaagatatcttcaacctaccagtaatattttcatcc
attttctctctatgaccagttgtcttttctatggaaaatcctaaagtagg
aaaagcaaaggacatattcatctagcaattcaacaaatgactctgaggcc
ctttctagggtgggaaactggcatgttctgaggatgtagcagcatataag
acatagcaccctggtcgtagggtcttatatgaatggatagtaaatatgca
attataatccagtacacaacagcaggaatacaggttgttaagaaaaagca
gagataaggggggcctgactgggctttaagcttgtgcttagtttgagaaa
atatcttccaaaattatctagttaaactaagtgaacatagttgagaagaa
ctagatgatcccatacaaaccaattattgaagaaagatctcctgaatttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161799719_161800877
seq2: B6Ng01-011E14.b_41_1197 (reverse)

seq1  CTCACCTGA-GTAAGATTGACAGGTAGCAGGTCAATGTCAAC-AAATCAA  48
      ||||||||| |||| |||||||||||||||||||  |||| | |||||| 
seq2  CTCACCTGAGGTAAAATTGACAGGTAGCAGGTCATGGTCACCAAAATCAT  50

seq1  TGTTGTATGTTAAATAAGGTGTTTTTAAATGTAAATGCACATAAAATAAT  98
      |||||||||||||   |||||||||| ||||| |||||||||||||||||
seq2  TGTTGTATGTTAA--TAGGTGTTTTT-AATGT-AATGCACATAAAATAAT  96

seq1  GTTATGTATTGAAAAAGTAATGAAATCATTGTGGCTAGAAGCTGTCAAGA  148
      ||||||||||| |||||||||||||||  |||||||||||||| ||||||
seq2  GTTATGTATTG-AAAAGTAATGAAATCCATGTGGCTAGAAGCTTTCAAGA  145

seq1  GCATAATTCTGTATTTCCTTTAGGAGTAATGATTCAGTATTCTATAATTC  198
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCATTATTCTGTATTTCCTTTAGAAGTAATGATTCAGTATTCTATAATTC  195

seq1  AGTATTCATGGTAGCTTTGTATAAAAATAATCACCAGAAATATTGAGAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATGGTAGCTTTGTATAAAAATAATCACCAGAAATATTGAGAAT  245

seq1  TGATTGTGCATAGTCTGGGTTCAGTTAGTAAGTATG-AAGGGATATCTTA  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGATTGTGCATAGTCTGGGTTCAGTTAGTAAGTATGAAAGGGATATCTTA  295

seq1  GTATTTTTATATATATAGGCATTCTTATATGTAATTTTATTGATTCTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTATATATATAGGCATTCTTATATGTAATTTTATTGATTCTGTG  345

seq1  GTAATACTGGACAGATACTAATAATAGTCTATTGAGTAACAGGTATAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTGGACAGATACTAATAATAGTCTATTGAGTAACAGGTATAATT  395

seq1  CTAGCACTTTTGATATGTATGGTTCTTTTATCTAATTCCTTTTTGATATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTTTTGATATGTATGGTTCTTTTATCTAATTCCTTTTTGATATT  445

seq1  TATTGTTCTTCTTCACAACAATTCTATTAGACAAAATGTATCTTTCTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTTCTTCACAACAATTCTATTAGACAAAATGTATCTTTCTTAT  495

seq1  TTTGTGAAGATGGTTACTGAGGTTTAAAGAAAATAATTTCCTCACAGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAGATGGTTACTGAGGTTTAAAGAAAATAATTTCCTCACAGTTC  545

seq1  CTTACGGGATGTAGCATTCTGATCAAGTACTCCAGGCTGAACGGGGTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGGATGTAGCATTCTGATCAAGTACTCCAGGCTGAACGGGGTCTT  595

seq1  TCCTTCACTTGTTCCAATTCCTCTGGTGGATGTTTAATCCCCTAGTATCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTTGTTCCAATTCCTCTGGTGGATGTTTAATCCCCTAGTATCT  645

seq1  CAGAATGTGACTGTATTTACACACTGGGATTTTAAAGAAGTAACTATGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGACTGTATTTACACACTGGGATTTTAAAGAAGTAACTATGGT  695

seq1  AAAATGATGTCAGTGGGTGAGCCTTAGTCAAGTGTGATTAATGTCTTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATGTCAGTGGGTGAGCCTTAGTCAAGTGTGATTAATGTCTTTCT  745

seq1  TTTAAAAAAAATAGGACACAGACATACTCAAAAGAAAGACAATGTAAGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAATAGGACACAGACATACTCAAAAGAAAGACAATGTAAGGG  795

seq1  AACAGATTGAAGATAGCCATCTGAAAGTCACACTCAGAGAGTGGCTCTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTGAAGATAGCCATCTGAAAGTCACACTCAGAGAGTGGCTCTAA  845

seq1  AAGAAGCCAATTCTGTTGACAGCTTGATCTCAGATGTCTTTCCTCCAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAATTCTGTTGACAGCTTGATCTCAGATGTCTTTCCTCCAGAA  895

seq1  CCTTGAGGAAAAACATTTCTGTAGTTTAAGCTCAGAGTGTCGTCCTTTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGAAAAACATTTCTGTAGTTTAAGCTCAGAGTGTCGTCCTTTAC  945

seq1  CATGGCTGCCTGAGCAAAGGAATGACACTAGAATTGAGATGCTAGGCTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGCCTGAGCAAAGGAATGACACTAGAATTGAGATGCTAGGCTGA  995

seq1  TAAATCAGACGGGCTCTCGGCCTTCAAATCTCCTGGAGTCTGTCCACTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGACGGGCTCTCGGCCTTCAAATCTCCTGGAGTCTGTCCACTTG  1045

seq1  TCATAACCCACTAGAGAACATCTTTTCCTTTTTTTTCTTTTTTCTTTTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACCCACTAGAGAACATCTTTTCCTTTTTTTTCTTTTTTCTTTTTC  1095

seq1  TCTTTTACTCTAGGGAGGAAACAGTATAATTACCAATGAGGCTATGACTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTCTAGGGAGGAAACAGTATAATTACCAATGAGGCTATGACTA  1145

seq1  AATCTGGAATTC  1159
      ||||||||||||
seq2  AATCTGGAATTC  1157

seq1: chrX_161637009_161638102
seq2: B6Ng01-011E14.g_63_1162

seq1  GAATTCTTTCTATTCCTCTCAACATTTTATGACATGAGGATTTATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTATTCCTCTCAACATTTTATGACATGAGGATTTATAGGAG  50

seq1  ATTAAACATCTACCTTGCTCATTCCCACTCATTCTCTCCTATGGTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACATCTACCTTGCTCATTCCCACTCATTCTCTCCTATGGTGATTT  100

seq1  TGGGTTTTGAAACTAGCTAGTAACACAGCAATCACACAACTCCAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTGAAACTAGCTAGTAACACAGCAATCACACAACTCCAGAGAAG  150

seq1  AGGCACATCTAGATCAGCTAATGGAATTCTCTCATTTCTTCCGTTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATCTAGATCAGCTAATGGAATTCTCTCATTTCTTCCGTTGAATA  200

seq1  AAAGGAAAGGAAAGCTCATAGATGAGTCTGCATGCCTGCTATAAACTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGAAAGCTCATAGATGAGTCTGCATGCCTGCTATAAACTGAC  250

seq1  TGCATGTATTCCCAAGGCACAACTAAGGACAGAAGTGGAAGAGCTACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATTCCCAAGGCACAACTAAGGACAGAAGTGGAAGAGCTACTTG  300

seq1  GAACATTTATTTAGATGAATAAGCTCTCTTTGGGGCATAGTTTATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTATTTAGATGAATAAGCTCTCTTTGGGGCATAGTTTATGAAAA  350

seq1  ATTAAATTGACAGTGACAGCTCATTGCTAAGTACTTTAACAAGCCCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTGACAGTGACAGCTCATTGCTAAGTACTTTAACAAGCCCAATG  400

seq1  TTCAATTGGGATCCACCTAATCAATTGGAATCTTCATAGTGGAAAGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGGGATCCACCTAATCAATTGGAATCTTCATAGTGGAAAGGTAA  450

seq1  AAAAGACTAAGGAAGTGTCTTCATATTGCATCCAGAGAAATAATATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTAAGGAAGTGTCTTCATATTGCATCCAGAGAAATAATATGAAA  500

seq1  TTACTGGTGCCTTTAGAGTTGGGGCTCTGAAGGTAGAGGTGGGAGGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTGCCTTTAGAGTTGGGGCTCTGAAGGTAGAGGTGGGAGGCCTA  550

seq1  TAGGGAGTGCTGGTAATGAATATTGTCCACCTTGCCATTTTTCTTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTGCTGGTAATGAATATTGTCCACCTTGCCATTTTTCTTATTGT  600

seq1  ATGTAGGCTGATGCTGTGGTACCGACTCATATCTGACTATCAACAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCTGATGCTGTGGTACCGACTCATATCTGACTATCAACAGGGTG  650

seq1  CCTGTCAGTATCTGGAAGATATCTTCAACCTACCAGTAATATTTTCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGTATCTGGAAGATATCTTCAACCTACCAGTAATATTTTCATCC  700

seq1  ATTTTCTCTCTATGACCAGTTGTCTTTTCTATGGAAAATCCTAAAGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCTATGACCAGTTGTCTTTTCTATGGAAAATCCTAAAGTAGG  750

seq1  AAAAGCAAAGGACATATTCATCTAGCAATTCAACAAATGACTCTGAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAGGACATATTCATCTAGCAATTCAACAAATGACTCTGAGGCC  800

seq1  C-TTCTAGGGTGGGAAACTGGCATGTTCTGAGGATGTAGCAGCATATAAG  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGGGTGGGAAACTGGCATGTTCTGAGGATGTAGCAGCATATAAG  850

seq1  ACATAGCA-CCTGGTCGTAGGGGTCTTATATGAATGGATAAGTAAATATG  898
      |||||||| |||||||||| ||||||||||||||||||| ||||||||||
seq2  ACATAGCACCCTGGTCGTA-GGGTCTTATATGAATGGAT-AGTAAATATG  898

seq1  CAATTATAATCCAGTACAACAACAGCAGGAATACA-GTTGTTA--GAAAA  945
      ||||||||||||||||| ||||||||||||||||| |||||||   ||||
seq2  CAATTATAATCCAGTAC-ACAACAGCAGGAATACAGGTTGTTAAGAAAAA  947

seq1  GCAGAGATAAAGGGGGCCTGACT-GGCCTTAAGC-TGTGCTAGTTTTGAG  993
      |||||||||| |||||||||||| ||| |||||| ||||||   ||||||
seq2  GCAGAGATAAGGGGGGCCTGACTGGGCTTTAAGCTTGTGCTTAGTTTGAG  997

seq1  AAAATATCTT-CAAAAATATCTAG-TAAACTAAGTGAACATAAGTTGAGA  1041
      |||||||||| ||||| ||||||| |||||||||||||||| ||||||||
seq2  AAAATATCTTCCAAAATTATCTAGTTAAACTAAGTGAACAT-AGTTGAGA  1046

seq1  GAAACTAGATGAT-CCATATAACACAATTAATGAAG-AAGATCTCCTGAT  1089
        ||||||||||| ||||| ||  |||||| ||||| |||||||||||| 
seq2  AGAACTAGATGATCCCATACAAACCAATTATTGAAGAAAGATCTCCTGA-  1095

seq1  ATTTT  1094
      |||||
seq2  ATTTT  1100