BAC Information

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BAC

Clone NameB6Ng01-011G07
ChromosomeX (Build37)
Map Location 108,497,797 - 108,552,175
singlet/doubletdoublet
Overlap geneRps6ka6
Upstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
Downstream geneEG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011G07.bB6Ng01-011G07.g
ACCDH846791DH846792
length1,1421,123
definitionDH846791|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G07, 5' end.DH846792|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,551,027 - 108,552,175)(108,497,797 - 108,498,928)
sequence
gaattcatacaataagtagctcttagaaagacagaaataatcactatttc
tgagaaagaaagaaaatcatcacaatagctgaggtttacttacaaagagc
aaaaataaggcaatcaggcagtgaaaacagtgatgaagacatttgtaagg
aaagagatttactgagtgtgtcagtagttttatgaaatgtactggtgaat
ataaactagacattgataatttgaatatagtctggtacctatatgatata
ggatatataataaacatagaaatatatgtaggacagaaaagacaaataga
gatggctttgtccatgcatgatgtaaggtaagtatcaaagatgatcttgg
ttgtcagctttacacacctgaaaaatggaacctcagttgaaacactgcat
ccatcagtttagcctgtgggcctatttgtaaggtattatcttaattgatg
gttggtgtaggaagacctagcacactgtgggtgctaccatacctggctag
gtgagtctgctctgtataaagaaggtggctgaacaggctggaggaagtat
gccagtgagcagcattcctacatggtctatgctttatttcttgccttggc
ttctctccatggactgtaatgtgtaagccaaataaaccctttaaccctca
agttgtttttgtcatggtatctattacagcagcagaaaacagtcagacag
ggatggaaaccaaaattaggaggctctattgagaagttgctggtgtttgt
agatgaagtaacttgtaaattaggtatatatatatatatattctataaaa
ttttatttttaatgtttctgagagtatatattaacttagaagaacagaga
tgaaggttttaatatcaaattaataaatgcttacatatttgacaaataat
tccacagaaacatttcaagttattaaaagttttgttatccatttcatctg
tgagtttatttcttgctttgtctcataaaaagatttaagaattccataga
taaataacattgaattcaaggcagtagcataagttagaacatgctgttgt
tgctctaacctagcatattgactgctgaggaagaaggctgcttttgaggt
taagcctagcttgggggccaggacggtttgagcctagcttgg
gaattctttttcagttaaaatttctttttttatttcttctaagcataaaa
gaattggtcagctcttggagacaaatagattcatgctcctattgcagaag
aacctgccactttaccttgcagataaatgtattcacttgagaaggcctaa
aggattgtaaattttcatgcctgttttcttgtattatttcattttatacg
gatgctagaagaatcttatgggaaaaatatagttctgaaaatatcaagga
gcatgtatttttaaactcctgctatatttggcacccaaccttgtgtataa
acacacattcatattctttctccctctctatctccctatccccactcaat
gaattatataatttagctatgtatttaataaaagaggcaggtttacatcc
ataaatgatcaagcaaggtcaaatataaaatgttagaaagttacagcctt
tttatttagtacccagagaatgccagtagtttaacataatttcttgataa
ttgttgctcacagttttaacaggaagaaaaagaaatataactttaggtca
tctttggcatgttgtaaattcaaaaggatagtgatttcttcagaagcact
gtgaggtaaaagaacactgtagaatgcactactaaatttgatctcacaca
atgaaaaatgtagtataatgaatgaaaacatcatgtcaaaaggaacagcg
ttttaaagaaatatttacaaaataaataatggtataaaatgtataatagg
aaaaatacagtttatagaaacctggggaaatttctacttcaatttcagat
tttagatttttaagtatctgtgaagtgaatctatatacaatttctactta
acagtatttctgttgaggagtgcaatgaattctagtgattattaatgtct
aaatcagaacaatagctacaagaattacgaagtggaagtgtcagaaaatg
atttttaaagatatggcagtggcaaactatgctctttgcataaatcctgg
ctaccacatgactagtaaattacttctgttttgctacaactatttttccc
atttatatatgggagatatacaagaataattctcattcatcaggcatgct
caggttggatttaattaaaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_108551027_108552175
seq2: B6Ng01-011G07.b_44_1185 (reverse)

seq1  CCAAGCTAGGCTCAAACCACTCTGTGGCCCCCAGGCTAGGCTTAACCTCA  50
      ||||||||||||||||||   |  ||||||||| ||||||||||||||||
seq2  CCAAGCTAGGCTCAAACCGTCC--TGGCCCCCAAGCTAGGCTTAACCTCA  48

seq1  AAAGCAGCCTTCTTCCTCAGCAGCCAATATGCTAGGGTTAGAGGCAAACA  100
      ||||||||||||||||||||||| |||||||||| ||||||||   ||||
seq2  AAAGCAGCCTTCTTCCTCAGCAGTCAATATGCTA-GGTTAGAG--CAACA  95

seq1  ACAGCATG-TCTAACTTATGCTACTTGCTTTGAATTCCAATTGTTATTTA  149
      |||||||| ||||||||||||||| ||| ||||||||  | |||||||||
seq2  ACAGCATGTTCTAACTTATGCTAC-TGCCTTGAATTC--AATGTTATTTA  142

seq1  TCTATGGAATTCTTAAATC-TTTTATGAGACAAAGCAAGAAATAAACTCA  198
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTATGGAATTCTTAAATCTTTTTATGAGACAAAGCAAGAAATAAACTCA  192

seq1  CAGATGAAAATGGATAACAAAACTTTTAATAACTTGAAATGTTTCTGTGG  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATG-AAATGGATAACAAAACTTTTAATAACTTGAAATGTTTCTGTGG  241

seq1  AATTATTTGTCAAATATGTAAGCATTTATTAATTTGATATTAAAACCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGTCAAATATGTAAGCATTTATTAATTTGATATTAAAACCTTC  291

seq1  ATCTCTGTTCTTCTAAGTTAATATATACTCTCAGAAACATTAAAAATAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTTCTTCTAAGTTAATATATACTCTCAGAAACATTAAAAATAAA  341

seq1  ATTTTATAGAATATATATATATATATACCTAATTTACAAGTTACTTCATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGAATATATATATATATATACCTAATTTACAAGTTACTTCATC  391

seq1  TACAAACACCAGCAACTTCTCAATAGAGCCTCCTAATTTTGGTTTCCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACCAGCAACTTCTCAATAGAGCCTCCTAATTTTGGTTTCCATC  441

seq1  CCTGTCTGACTGTTTTCTGCTGCTGTAATAGATACCATGACAAAAACAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGACTGTTTTCTGCTGCTGTAATAGATACCATGACAAAAACAAC  491

seq1  TTGAGGGTTAAAGGGTTTATTTGGCTTACACATTACAGTCCATGGAGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTAAAGGGTTTATTTGGCTTACACATTACAGTCCATGGAGAGA  541

seq1  AGCCAAGGCAAGAAATAAAGCATAGACCATGTAGGAATGCTGCTCACTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCAAGAAATAAAGCATAGACCATGTAGGAATGCTGCTCACTGG  591

seq1  CATACTTCCTCCAGCCTGTTCAGCCACCTTCTTTATACAGAGCAGACTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTCCTCCAGCCTGTTCAGCCACCTTCTTTATACAGAGCAGACTCA  641

seq1  CCTAGCCAGGTATGGTAGCACCCACAGTGTGCTAGGTCTTCCTACACCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCAGGTATGGTAGCACCCACAGTGTGCTAGGTCTTCCTACACCAA  691

seq1  CCATCAATTAAGATAATACCTTACAAATAGGCCCACAGGCTAAACTGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATTAAGATAATACCTTACAAATAGGCCCACAGGCTAAACTGATG  741

seq1  GATGCAGTGTTTCAACTGAGGTTCCATTTTTCAGGTGTGTAAAGCTGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTGTTTCAACTGAGGTTCCATTTTTCAGGTGTGTAAAGCTGACA  791

seq1  ACCAAGATCATCTTTGATACTTACCTTACATCATGCATGGACAAAGCCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATCATCTTTGATACTTACCTTACATCATGCATGGACAAAGCCAT  841

seq1  CTCTATTTGTCTTTTCTGTCCTACATATATTTCTATGTTTATTATATATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTGTCTTTTCTGTCCTACATATATTTCTATGTTTATTATATATC  891

seq1  CTATATCATATAGGTACCAGACTATATTCAAATTATCAATGTCTAGTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCATATAGGTACCAGACTATATTCAAATTATCAATGTCTAGTTTA  941

seq1  TATTCACCAGTACATTTCATAAAACTACTGACACACTCAGTAAATCTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACCAGTACATTTCATAAAACTACTGACACACTCAGTAAATCTCTT  991

seq1  TCCTTACAAATGTCTTCATCACTGTTTTCACTGCCTGATTGCCTTATTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAAATGTCTTCATCACTGTTTTCACTGCCTGATTGCCTTATTTT  1041

seq1  TGCTCTTTGTAAGTAAACCTCAGCTATTGTGATGATTTTCTTTCTTTCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGTAAGTAAACCTCAGCTATTGTGATGATTTTCTTTCTTTCTC  1091

seq1  AGAAATAGTGATTATTTCTGTCTTTCTAAGAGCTACTTATTGTATGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGTGATTATTTCTGTCTTTCTAAGAGCTACTTATTGTATGAATT  1141

seq1  C  1149
      |
seq2  C  1142

seq1: chrX_108497797_108498928
seq2: B6Ng01-011G07.g_64_1186

seq1  GAATTCTTTTTCAGTTAAAATTTCTTTTTTTATTTCTTCTAAGCATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCAGTTAAAATTTCTTTTTTTATTTCTTCTAAGCATAAAA  50

seq1  GAATTGGTCAGCTCTTGGAGACAAATAGATTCATGCTCCTATTGCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTCAGCTCTTGGAGACAAATAGATTCATGCTCCTATTGCAGAAG  100

seq1  AACCTGCCACTTTACCTTGCAGATAAATGTATTCACTTGAGAAGGCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCACTTTACCTTGCAGATAAATGTATTCACTTGAGAAGGCCTAA  150

seq1  AGGATTGTAAATTTTCATGCCTGTTTTCTTGTATTATTTCATTTTATACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTAAATTTTCATGCCTGTTTTCTTGTATTATTTCATTTTATACG  200

seq1  GATGCTAGAAGAATCTTATGGGAAAAATATAGTTCTGAAAATATCAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAGAAGAATCTTATGGGAAAAATATAGTTCTGAAAATATCAAGGA  250

seq1  GCATGTATTTTTAAACTCCTGCTATATTTGGCACCCAACCTTGTGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATTTTTAAACTCCTGCTATATTTGGCACCCAACCTTGTGTATAA  300

seq1  ACACACATTCATATTCTTTCTCCCTCTCTATCTCCCTATCCCCACTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTCATATTCTTTCTCCCTCTCTATCTCCCTATCCCCACTCAAT  350

seq1  GAATTATATAATTTAGCTATGTATTTAATAAAAGAGGCAGGTTTACATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATAATTTAGCTATGTATTTAATAAAAGAGGCAGGTTTACATCC  400

seq1  ATAAATGATCAAGCAAGGTCAAATATAAAATGTTAGAAAGTTACAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGATCAAGCAAGGTCAAATATAAAATGTTAGAAAGTTACAGCCTT  450

seq1  TTTATTTAGTACCCAGAGAATGCCAGTAGTTTAACATAATTTCTTGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGTACCCAGAGAATGCCAGTAGTTTAACATAATTTCTTGATAA  500

seq1  TTGTTGCTCACAGTTTTAACAGGAAGAAAAAGAAATATAACTTTAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTCACAGTTTTAACAGGAAGAAAAAGAAATATAACTTTAGGTCA  550

seq1  TCTTTGGCATGTTGTAAATTCAAAAGGATAGTGATTTCTTCAGAAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCATGTTGTAAATTCAAAAGGATAGTGATTTCTTCAGAAGCACT  600

seq1  GTGAGGTAAAAGAACACTGTAGAATGCACTACTAAATTTGATCTCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAAAAGAACACTGTAGAATGCACTACTAAATTTGATCTCACACA  650

seq1  ATGAAAAATGTAGTATAATGAATGAAAACATCATGTCAAAAGGAACAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATGTAGTATAATGAATGAAAACATCATGTCAAAAGGAACAGCG  700

seq1  TTTTAAAGAAAATATTTACAAAATAAATAATGGTATAAAATGTATAATAG  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAG-AAATATTTACAAAATAAATAATGGTATAAAATGTATAATAG  749

seq1  GAAAAATACAGTTTATAGAAACCTGGGGAAATTTCTACTTCAATTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACAGTTTATAGAAACCTGGGGAAATTTCTACTTCAATTTCAGA  799

seq1  TTTTAGATTTTTAAGTATCTGTGAAGTGAATCTATATACAATTTCTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTTTTAAGTATCTGTGAAGTGAATCTATATACAATTTCTACTT  849

seq1  AACAGTATTTCTGTTGAGGAGTGCAATGAATTCTAGTGATTATTAATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTTCTGTTGAGGAGTGCAATGAATTCTAGTGATTATTAATGTC  899

seq1  TAAATCAGAACAATAGCTACAAGAATTACGAAGTGGAAGTGTCAGAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGAACAATAGCTACAAGAATTACGAAGTGGAAGTGTCAGAAAAT  949

seq1  GATTTTTTAAAGATATGGCAGTGGCAAACTATGCTCTTTGCATAAATCCT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TTTTTAAAGATATGGCAGTGGCAAACTATGCTCTTTGCATAAATCCT  998

seq1  GGCTAACACATGACTAGTAATATTACTTCTGTTTTGCTACATACTATTTT  1050
      ||||| |||||||||||||| |||||||||||||||||||| ||||||||
seq2  GGCTACCACATGACTAGTAA-ATTACTTCTGTTTTGCTACA-ACTATTTT  1046

seq1  TCCCATTTATATTATGGGAGATAATACAAGATAAATTCTCATTCATCAGC  1100
      ||||||||||| |||||||||| ||||||||  |||||||||||||||| 
seq2  TCCCATTTATA-TATGGGAGAT-ATACAAGAATAATTCTCATTCATCAGG  1094

seq1  CATGCTCAGGTTTGGATATTTAATTAAAAGTT  1132
      |||||||||||| |   |||||||||||||||
seq2  CATGCTCAGGTTGG---ATTTAATTAAAAGTT  1123