BAC Information

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BAC

Clone NameB6Ng01-011M07
ChromosomeX (Build37)
Map Location 101,284,015 - 101,285,207
singlet/doubletsinglet
Overlap geneC77370
Upstream geneEG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12
Downstream geneVcp-ps, EG621542, Uprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011M07.bB6Ng01-011M07.g
ACCDH847058DH847059
length1,1701,161
definitionDH847058|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M07, 5' end.DH847059|Mus musculus domesticus DNA, BAC clone: B6Ng01-011M07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctgtgaaccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatataaattggatattagtccc
ctgatttagggtaggtaaagatcctttcccaatctgttggtggccttttt
gtcttattgacaggtgtcttttgccttacagaagctttgtaattttatga
ggttccatttgtcgattctcgatcttacagcacaagccattgctgttctt
ttcaggaatttttcctctgtgcctatatcttcgaggcttttctccacttt
ctcctctataagtttcactgtctctggttttgtgtggagttccttgatcc
acttagatttgaccttagtacaaggagataggaatggatcaattcgcatt
cttctacatgttaactgccagttgttcaatatacctaatatctaagtaag
tggggaaaaactacaagcttcttttcataaaatctagatcttacttatgc
tcacatttttaaaatcttgatgtgttttaagagaaatggttgtcaaaatt
ctattgaagtcatatatataagtcaagaaattaaggtatcttctacctct
ttcaatttcagaaataacttaaaattatcctagactttactttgcatctt
tcctaattgggcaactttgaataatatggttgttaataggaaatatgtac
cttgcatagtaggtgtaagctatttaataaaaacagaagtaatgaagcca
gtctagaaaacagatcccagggagcattttataaaccctatagctgaaat
aacatgtaaaatacaaaataagacaaactgaatgactgacactgtatatt
tcaatgtgcaggttggacaacatttgaaattggaatggaaacagtaagag
gctacattcatggataatcaacaagataaagttattgctgcctcagccat
ggagactacaatctgattaatggggtcaaacaatggtagaaagtttatga
tgatataccattctcttttctgtagtcttttcttattaatgggatttgag
tatggacctgaaaagttgaatcaaatgtatctgaggtgatgttaatcaac
tttttctaacgaatctaacctagactgaggatctctgtagattctcgaaa
taatttctcagatcttgtta
gaattctctctctaagagctaaaaatagatctaccacatgaccaagctat
atccctctttggcatctgcccaacagacttgaaattttgttccacagata
cttgctcagtcatgatctgtggggcaattggctacacgcagacagtctgg
tttccagtagaggctagatcttgaaccccgggacctggtagtgataattc
acttacatgggacagaaggagttctctcatgtctcctggaccctggctcc
tgtcagagttaccgccaccccccccccccccacacacacacaggagaggt
gtagctatcagccacttaggaatagcatcaagccctcccacatgcaaata
aggtttcccccaaactctcagtccaagccaatgagaggtgccttctgtca
aaccctaaatcacccccagaactgtatatagagccatgcagggaattaaa
ggtacgtgagaactattcctttgtctgagccttttgttctaagagctgta
acacttgggaagagatcttctctcctgaagagccacctgagttcctgagg
tcccgccacattcctcactggattgttgtcttttccctgaccgagtctga
cctgactcagttcagagaggctcagagttaaagagtgacctggaaggcgt
ggcagagattttgtctccctgcctgtattcacttcccctcgatggggcct
tcccacccagcctggagagagatctccgtggaaaacctctggtacccagg
cccacaatgatcattgctgctctgtttaccagtgaaatggaaaaaaccta
aatgtccttcaactaatgaatggatagtgggaactatagtacatatacaa
atagactactatttcaactgtaaagaaaaaatggaatgaaattttcagtc
aatgggacataactagtaataaatatattatattcaatagtgatggaggt
gacccagacccagaaaggaagaacaccatgattttctcttgtgattctta
cctttgatctttagatatggagtaataacctgggagttactataaaatca
gaaaaatagctataagaaagtagaaattcccgacccttggttctatgagg
ggcgaattgggaaagccggcagattaatctgtatgggaacgggtatatac
tgatgagttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101284015_101285207
seq2: B6Ng01-011M07.b_45_1214 (reverse)

seq1  TAACAAATGAATCTGAGAAATTTATCTGAGATCTTACAGAGATCCT---T  47
      ||||||    ||||||||||||  |  ||||   ||||||||||||   |
seq2  TAACAA---GATCTGAGAAATTATTTCGAGAATCTACAGAGATCCTCAGT  47

seq1  CTAGTTGAGTTAAAGATCTGGTAGAAAAAAGTTTAGATTTACATCAACTT  97
      ||||    |||  ||||  | ||| ||||||||  |||| ||||| || |
seq2  CTAG----GTT--AGATTCGTTAG-AAAAAGTT--GATTAACATC-ACCT  87

seq1  CAGATACATTTTGGATTCAACCTATCTCAGGTTTCTATACTCAAAATCCA  147
      |||||||||||  ||||||||   | |||||  || |||||| |||||| 
seq2  CAGATACATTT--GATTCAAC--TTTTCAGG--TCCATACTC-AAATCC-  129

seq1  CATTAATAAGAAAAGACTACCAGAAAAGAGAAT-GTATATCATCATTAAA  196
      ||||||||||||||||||| ||||||||||||| ||||||||||| ||||
seq2  CATTAATAAGAAAAGACTA-CAGAAAAGAGAATGGTATATCATCA-TAAA  177

seq1  CTTTCTTACCATTGTTTTTGACCCCATTAATCAGATTGTTGTCTCCATTG  246
      ||||| ||||||||  ||||||||||||||||||||||| ||||||| ||
seq2  CTTTC-TACCATTG--TTTGACCCCATTAATCAGATTGTAGTCTCCA-TG  223

seq1  GCTGAGGCAGCAATAACTTTATCTTGTTGGTTATCCATGAATGTAGCCTC  296
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGAGGCAGCAATAACTTTATCTTGTTGATTATCCATGAATGTAGCCTC  273

seq1  TTACTGTTT-CATTCCAATTTCAAATGTTGTCCAACCTGCACATTTGAAA  345
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TTACTGTTTCCATTCCAATTTCAAATGTTGTCCAACCTGCACA-TTGAAA  322

seq1  TATACAGTGTCAGTCATTCAGTTTGTCTTATTTTGTATTTTACATGTTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGTCAGTCATTCAGTTTGTCTTATTTTGTATTTTACATGTTAT  372

seq1  TTCAGCTATAGGGTTTATAAAATGCTCCCTGGGATCTGTTTTCTAGACTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTATAGGGTTTATAAAATGCTCCCTGGGATCTGTTTTCTAGACTG  422

seq1  GCTTCATTACTTCTGTTTTTATTAAATAGCTTACACCTACTATGCAAGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTACTTCTGTTTTTATTAAATAGCTTACACCTACTATGCAAGGT  472

seq1  ACATATTTCCTATTAACAACCATATTATTCAAAGTTGCCCAATTAGGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTCCTATTAACAACCATATTATTCAAAGTTGCCCAATTAGGAAA  522

seq1  GATGCAAAGTAAAGTCTAGGATAATTTTAAGTTATTTCTGAAATTGAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGTAAAGTCTAGGATAATTTTAAGTTATTTCTGAAATTGAAAG  572

seq1  AGGTAGAAGATACCTTAATTTCTTGACTTATATATATGACTTCAATAGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAGATACCTTAATTTCTTGACTTATATATATGACTTCAATAGAA  622

seq1  TTTTGACAACCATTTCTCTTAAAACACATCAAGATTTTAAAAATGTGAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAACCATTTCTCTTAAAACACATCAAGATTTTAAAAATGTGAGC  672

seq1  ATAAGTAAGATCTAGATTTTATGAAAAGAAGCTTGTAGTTTTTCCCCACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAGATCTAGATTTTATGAAAAGAAGCTTGTAGTTTTTCCCCACT  722

seq1  TACTTAGATATTAGGTATATTGAACAACTGGCAGTTAACATGTAGAAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGATATTAGGTATATTGAACAACTGGCAGTTAACATGTAGAAGAA  772

seq1  TGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGG  822

seq1  ATCAAGGAACTCCACACAAAACCAGAGACAGTGAAACTTATAGAGGAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAACTCCACACAAAACCAGAGACAGTGAAACTTATAGAGGAGAA  872

seq1  AGTGGAGAAAAGCCTCGAAGATATAGGCACAGAGGAAAAATTCCTGAAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGAAAAGCCTCGAAGATATAGGCACAGAGGAAAAATTCCTGAAAA  922

seq1  GAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGAACCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGAACCTC  972

seq1  ATAAAATTACAAAGCTTCTGTAAGGCAAAAGACACCTGTCAATAAGACAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTACAAAGCTTCTGTAAGGCAAAAGACACCTGTCAATAAGACAA  1022

seq1  AAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTACCCTAAATCAGGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTACCCTAAATCAGGG  1072

seq1  GACTAATATCCAATTTATATAAAGAACTCAAGAAGGTGGACTCCAGAAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCAATTTATATAAAGAACTCAAGAAGGTGGACTCCAGAAAA  1122

seq1  TCAAATAACCCCATTAAAAAATGGGGTTCACAGCTAAACAAAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAACCCCATTAAAAAATGGGGTTCACAGCTAAACAAAGAATTC  1170