BAC Information

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BAC

Clone NameB6Ng01-012E10
Chromosome1 (Build37)X (Build37)
Map Location 138,681,600 - 138,681,86676,021,894 - 76,023,040
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281
Downstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012E10.bB6Ng01-012E10.g
ACCDH847414DH847415
length9831,126
definitionDH847414|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E10, 5' end.DH847415|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(138,681,600 - 138,681,866)(76,021,894 - 76,023,040)
sequence
gaattctatcagatgttcaaaagagatctaacaccaatattctttaaact
cttccacaaaatagaaacagaaggagcactacccaattcattctatgaag
ccaaaattactctaatacctaatccacacaaatatccaacaaagaaagag
tacttcagaacaatttcccttacgaatactgatgcaaaaatattcaataa
aattctcacaaattgaattcaagaaaacatcaaagaatcatccatcataa
tcaagtaggcttcatcccagtgatgcagtgatagtgcaatatggaaaccc
atcaatgtaatccactacataaaaaaaaaactcaaaaaaatacccacatg
atcacctcactagatgctgaaaagcatttgacaaaagtcaatatcccttc
atggtaaaattcttagaaagatcagtaaatcaaggccaatacataaacat
agtaatatatatatatatatatatatatatatatatatatatataagccg
tgtggtggtggtgtacacctttaatcccagcaattgggaggcagaggcag
gctgatttctgagtttgaggccagcctggcctacaaagtgagttccagga
aagccagtgctatacagtgaaaccctgtctcgaaaaaaccatatatatat
atatgaaagacttgaagaaatcccactaaaaccagggaatagacatggct
gaccactctctccctatctatactatacagtactcgaagttctagctaga
gcaattagataaccaaaggagttcaaggggattcaaattgcacaggaata
agtcaaaacatcactatttgcagatgatatgctagtatacttaagtgact
ccaaaagttccaccagagaactctttaaatctgataaacaacctcagcaa
aatggttggatataacattaactcaaacaaataagctgccttcctttact
taaaggataaacagggtgaggagaaattaggaa
gaattcagttttcttttgggataaagaacatattctgaatttagatactg
atgatgtttacacagaattctaaaatacactatgaacaattgcattgcat
attttaaaatcattacatgatattctttatgctatataaattgatgcatt
ttataattttcagaattagagaaacaaaaaccaagaggtagatgacctct
ttaaggaaaaaaaaaacaataaaaataaatgacaaaggttaataaaactg
ccaaatgaatactagaaactcattattgttttagttagggttactattgc
tatctataataaaacaccataactaaaaatcaacttgggaaagaaagatt
tcatttcatcttgtaattttcaggtcacattctgttgctcacaaaaattg
ggccaaagttcaatcaaagtaagtacctgcaggcaggagttgatttggag
accaggaagaggttctgctttctggtttggtctctgttgcttgcttatag
aactcagaaatatcagtccatggctagcaccacccacagtgagctgggcc
ctcccatatcaaccactaattacaaaaccatcctatagactgcccacatg
taagtgctatgaaggcattttcttctttgaagttttgtcctttaaaatga
ttctaatttatgacataaagctatccaggacaactgccttctgttacttt
tatcaccatcaagaatgcatatggtagcaaatgctgacagatgcagtaaa
agaggaactcttccttactgttggtcagagtgtaaaatagtgcagccact
taggaaatatgtctggaggtttctcaaaaacggtagaaatagaactggca
tatgggccagccttacgcttcttctgcacatacacaatggctcttatatt
ctcctacagagacacatataatctaatgttcattgcttctcatatatata
gttagaaatataatcacataaatgttcattagcagatgagtgatacaata
gtgtgatatactaagctttaaaaataataaatttaggtatggaaaagtta
tagaggacaatgatttatttgtcgtcatacgattctgcttcgttctttgt
gtttaacttgacaatgagcctagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138681600_138681866
seq2: B6Ng01-012E10.b_103_612 (reverse)

seq1  AACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGCG  50
      |||||||||||| ||||||||||||||||||| ||||| ||||||||| |
seq2  AACTCAGAAATCAGCCTGCCTCTGCCTCCCAATTGCTGGGATTAAAGGTG  50

seq1  TGCGCCACCA-CGCCCGGCTCTAAGGACTGTTTGTA--------------  85
      | | |||||| | | |||||   |    | | | ||              
seq2  TACACCACCACCACACGGCTTATATATATATATATATATATATATATATA  100

seq1  -----------TACCA-----AGGTAACAGCCAAG--------------C  105
                 ||| |     | |||   |||  |              |
seq2  TATATATATATTACTATGTTTATGTATTGGCCTTGATTTACTGATCTTTC  150

seq1  TAAGAA------AATAAAGTCCTGGAGCTGGAAGTTT------TGCTTTT  143
      ||||||       || |||    |||  | ||  |||      |||||||
seq2  TAAGAATTTTACCATGAAG----GGATATTGACTTTTGTCAAATGCTTTT  196

seq1  CTGGGTGGA-AGAAGT----CTCTGGGAA-----------------CCTA  171
      | |  |  |  || ||     | |||| |                   ||
seq2  CAGCATCTAGTGAGGTGATCATGTGGGTATTTTTTTGAGTTTTTTTTTTA  246

seq1  TGTAATCAACT-CAGTTATCAAGAGGGTTCCTCAAAG--------CTGCA  212
      |||| |  | | || | ||     || ||||  |  |        |||||
seq2  TGTAGTGGATTACATTGAT----GGGTTTCCATATTGCACTATCACTGCA  292

seq1  T--CCGAGCTG-TCTCTTCTAGGTTAGG----------CTCTG-------  242
      |  | | | ||    || || | ||| |          || ||       
seq2  TCACTGGGATGAAGCCTACTTGATTATGATGGATGATTCTTTGATGTTTT  342

seq1  ------------TAGTGAGAATCTGTTTCTATTTTGT-------------  267
                  | |||||||| |  ||  || || |             
seq2  CTTGAATTCAATTTGTGAGAATTTTATTGAATATTTTTGCATCAGTATTC  392

seq1  --------------------------------------------------  267
                                                        
seq2  GTAAGGGAAATTGTTCTGAAGTACTCTTTCTTTGTTGGATATTTGTGTGG  442

seq1  --------------------------------------------------  267
                                                        
seq2  ATTAGGTATTAGAGTAATTTTGGCTTCATAGAATGAATTGGGTAGTGCTC  492

seq1  ------------------  267
                        
seq2  CTTCTGTTTCTATTTTGT  510

seq1: chrX_76021894_76023040
seq2: B6Ng01-012E10.g_64_1189

seq1  GAATTCAGTTTTCTTTTGGGATAAAGAACATATTCTGAATTTAGATACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCTTTTGGGATAAAGAACATATTCTGAATTTAGATACTG  50

seq1  ATGATGTTTACACAGAATTCTAAAATACACTATGAACAATTGCATTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTACACAGAATTCTAAAATACACTATGAACAATTGCATTGCAT  100

seq1  ATTTTAAAATCATTACATGATATTCTTTATGCTATATAAATTGATGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATCATTACATGATATTCTTTATGCTATATAAATTGATGCATT  150

seq1  TTATAATTTTCAGAATTAGAGAAACAAAAACCAAGAGGTAGATGACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTTCAGAATTAGAGAAACAAAAACCAAGAGGTAGATGACCTCT  200

seq1  TTAAGGAAAAAAAAAACAATAAAAATAAATGACAAAGGTTAATAAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAAAAAAAAACAATAAAAATAAATGACAAAGGTTAATAAAACTG  250

seq1  CCAAATGAATACTAGAAACTCATTATTGTTTTAGTTAGGGTTACTATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAATACTAGAAACTCATTATTGTTTTAGTTAGGGTTACTATTGC  300

seq1  TATCTATAATAAAACACCATAACTAAAAATCAACTTGGGAAAGAAAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAATAAAACACCATAACTAAAAATCAACTTGGGAAAGAAAGATT  350

seq1  TCATTTCATCTTGTAATTTTCAGGTCACATTCTGTTGCTCACAAAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATCTTGTAATTTTCAGGTCACATTCTGTTGCTCACAAAAATTG  400

seq1  GGCCAAAGTTCAATCAAAGTAAGTACCTGCAGGCAGGAGTTGATTTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGTTCAATCAAAGTAAGTACCTGCAGGCAGGAGTTGATTTGGAG  450

seq1  ACCAGGAAGAGGTTCTGCTTTCTGGTTTGGTCTCTGTTGCTTGCTTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGAGGTTCTGCTTTCTGGTTTGGTCTCTGTTGCTTGCTTATAG  500

seq1  AACTCAGAAATATCAGTCCATGGCTAGCACCACCCACAGTGAGCTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATATCAGTCCATGGCTAGCACCACCCACAGTGAGCTGGGCC  550

seq1  CTCCCATATCAACCACTAATTACAAAACCATCCTATAGACTGCCCACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATATCAACCACTAATTACAAAACCATCCTATAGACTGCCCACATG  600

seq1  TAAGTGCTATGAAGGCATTTTCTTCTTTGAAGTTTTGTCCTTTAAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTATGAAGGCATTTTCTTCTTTGAAGTTTTGTCCTTTAAAATGA  650

seq1  TTCTAATTTATGACATAAAGCTATCCAGGACAACTGCCTTCTGTTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTATGACATAAAGCTATCCAGGACAACTGCCTTCTGTTACTTT  700

seq1  TATCACCATCAAGAATGCATATGGTAGCAAATGCTGACAGATGCAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCATCAAGAATGCATATGGTAGCAAATGCTGACAGATGCAGTAAA  750

seq1  AGAGGAACTCTTCCTTACTGTTGGTCAGAGTGTAAAATAGTGCAGCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACTCTTCCTTACTGTTGGTCAGAGTGTAAAATAGTGCAGCCACT  800

seq1  TAGGAAATATGTCTGGAGGTTTCTCAAAAACGGTAGAAATAGAACTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATATGTCTGGAGGTTTCTCAAAAACGGTAGAAATAGAACTGGCA  850

seq1  TATGGGCCAGCCTTACGCTTCTTCTGCACATACACAATGGCTCTTATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCCAGCCTTACGCTTCTTCTGCACATACACAATGGCTCTTATATT  900

seq1  CCCCTACAGAGACACATATAATCTAATGTTCATTGCTTCTCAATATATAA  950
      | ||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CTCCTACAGAGACACATATAATCTAATGTTCATTGCTTCTC-ATATAT-A  948

seq1  TAGTTAGAAAATATAATCAACATAAATGTTCATTAGCAGATGAGTGAATA  1000
      ||||||| |||||||||| ||||||||||||||||||||||||||| |||
seq2  TAGTTAG-AAATATAATC-ACATAAATGTTCATTAGCAGATGAGTG-ATA  995

seq1  CAAATAGTGTGATATACTAAGCTTTAAAAAATTAAATAAAATTTTAGGTT  1050
      | ||||||||||||||||||||||||||||    ||||||  ||||||| 
seq2  C-AATAGTGTGATATACTAAGCTTTAAAAA---TAATAAA--TTTAGGT-  1038

seq1  AATGGAAAAAGTTATAGAAAGACAAATGATTTTATTTTGTCGTTCATACA  1100
       |||| ||||||||||| | ||| ||||||||   ||||||| |||||| 
seq2  -ATGG-AAAAGTTATAG-AGGAC-AATGATTT--ATTTGTCG-TCATAC-  1080

seq1  GATTCTTGCTTTCGTTCTTTTGTGTGTTTAACTTGTACAA-----ATAGA  1145
      ||||| ||| |||||||||   ||||||||||||| ||||      ||||
seq2  GATTC-TGC-TTCGTTCTT---TGTGTTTAACTTG-ACAATGAGCCTAGA  1124

seq1  AG  1147
      ||
seq2  AG  1126