BAC Information

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BAC

Clone NameB6Ng01-013J12
ChromosomeX (Build37)
Map Location 33,696,012 - 33,842,534
singlet/doubletdoublet
Overlap geneIl13ra1, Zcchc12, LOC547166
Upstream geneLOC100039557, LOC100039573, EG665074, LOC100039585, LOC100039497, EG210457, Dock11
Downstream geneLonrf3, EG621901, Pgrmc1, B230333C21Rik, LOC621983, Slc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J12.bB6Ng01-013J12.g
ACCDH848370DH848371
length1,1401,090
definitionDH848370|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J12, 5' end.DH848371|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,696,012 - 33,697,149)(33,841,409 - 33,842,534)
sequence
gaattcttcaaattggatattgtgtgtatgttatatgttggggagcggtt
atgcatgctgaagccagaggaggatgctgagggggtactctctgccttat
tcctttgcaaaaagggtcttcactgaacctgcagtgaggctggtgggcag
caagtgatccctatgtccctgccccccacagcactggggctacatgcacc
agcagccatgaacagtttttaaaatggatgctgacatttccaacccagat
ccccaatggttacacagaaaatggtcggatctaatgagtcacctcctcag
accaaattggttattttaggctacacttgatttaaaagatgaaagagttg
atttaaaaatgtttggatatctggccaagcataccagctaagaaattctc
agaacaccgtgtctgtctcagatcactggactctatcctctttctgagga
atgagatattttatctaaacacacaggaggatgagcctccttagggaaac
taacctaagtggtgggccttcaactttgagatcctttttaaaagtagaag
taaatatagataggattaacaactaagatacactttgttcatacaattgc
gttacaaagctggactctaagcacatacagagagaacagacccactccag
ctgttggtttcctgcagactctcattctagatcctatgtctagattcgta
aggcataggagcataatagtttgaggtttctgtgataaatgcagtcaccc
taatgagataatgaagaacatgtatgaaatagatatttaatagcactgta
gatagcttaaattagtaataacaggcacggggcacttcatttagagaagt
gctgtagtgtactagataatagccctgtactctggagtcacaatgtctgg
atttcagatatccactgtgttatttactgcctttttgaccttaggtcact
tgcttagcctttctgtaatttggttttcccatttagaaaatggtaggagg
agtagcaccttgtctcatgctgttgttttgttggactaaatcgagcatat
acatgaaacctagtaaaaatgctgtacacttagacatgctatggctagta
tacagtgggtgaagagcttttggcaaataataagtgcatt
gaattctgtcactggttctttgaccttgacaatttttagaatctgggacc
agctgaagatgaattggagtcatagcagttctggcacgatgtaaagttta
ggttttattgcagcacctcagaattaccattagtagaagttctttttttc
tcccaatctagatttctgtgtgctacttcacatcacagattagttacagc
atgagctgcagtgattgtccatggaggaaacactagcttgaggatcctga
gctaattttcttttaaaacttacccactgttctttttcgaaatgtacttc
gaaaatgaaatctatcaatatgagaattgttagagaaagttccttagcac
caggaacatcacagaacaaagctgttacatttgaacagggtgatctgcag
accttttatgatgtaattactgtgtgtataaaaatgaattaagggaggca
ttggataatgggattaaagacccgattttacttagtaaagatattgctaa
taaaagggaagagtttgcctatccttctaaagcagtctaaaatgtctctg
cagaaacactacattagcaatttctgagttatattacatgtgaagactga
catattttagttgataataccttctggactaaagacttgcctgtctctcc
ctgaattgctgcacacttttagctgcagctgaccaagtaccttagaaacc
aggtggcattttcatttcatttagtgattgttcaggcagtgataactgga
gttagatgtgctatatcattatgccacaaggctgggaaattttatattta
tagctatattttccatggggcaaaagattgacagtattcaagatttgctt
gacatttttacaacatatctcaatgcagtatggttttaccattaaaatta
gagagtttactgtaactctaagtcttgaaaacagcattcatgtggaaagt
cacagttattacaacaggaacatgtacgcttttgacgacatgttttagta
tctgcttgtagtctgacatatatcatatcagcatggttctgactattcga
gccatataatgtgctaaatgaattaggttggtaacagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_33696012_33697149
seq2: B6Ng01-013J12.b_46_1185

seq1  GAATTCTTCAAATTGGATATTGTGTGTATGTTATATGTTGGGGAGCGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAATTGGATATTGTGTGTATGTTATATGTTGGGGAGCGGTT  50

seq1  ATGCATGCTGAAGCCAGAGGAGGATGCTGAGGGGGTACTCTCTGCCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTGAAGCCAGAGGAGGATGCTGAGGGGGTACTCTCTGCCTTAT  100

seq1  TCCTTTGCAAAAAGGGTCTTCACTGAACCTGCAGTGAGGCTGGTGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCAAAAAGGGTCTTCACTGAACCTGCAGTGAGGCTGGTGGGCAG  150

seq1  CAAGTGATCCCTATGTCCCTGCCCCCCACAGCACTGGGGCTACATGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATCCCTATGTCCCTGCCCCCCACAGCACTGGGGCTACATGCACC  200

seq1  AGCAGCCATGAACAGTTTTTAAAATGGATGCTGACATTTCCAACCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCATGAACAGTTTTTAAAATGGATGCTGACATTTCCAACCCAGAT  250

seq1  CCCCAATGGTTACACAGAAAATGGTCGGATCTAATGAGTCACCTCCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGGTTACACAGAAAATGGTCGGATCTAATGAGTCACCTCCTCAG  300

seq1  ACCAAATTGGTTATTTTAGGCTACACTTGATTTAAAAGATGAAAGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTGGTTATTTTAGGCTACACTTGATTTAAAAGATGAAAGAGTTG  350

seq1  ATTTAAAAATGTTTGGATATCTGGCCAAGCATACCAGCTAAGAAATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATGTTTGGATATCTGGCCAAGCATACCAGCTAAGAAATTCTC  400

seq1  AGAACACCGTGTCTGTCTCAGATCACTGGACTCTATCCTCTTTCTGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCGTGTCTGTCTCAGATCACTGGACTCTATCCTCTTTCTGAGGA  450

seq1  ATGAGATATTTTATCTAAACACACAGGAGGATGAGCCTCCTTAGGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATATTTTATCTAAACACACAGGAGGATGAGCCTCCTTAGGGAAAC  500

seq1  TAACCTAAGTGGTGGGCCTTCAACTTTGAGATCCTTTTTAAAAGTAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAAGTGGTGGGCCTTCAACTTTGAGATCCTTTTTAAAAGTAGAAG  550

seq1  TAAATATAGATAGGATTAACAACTAAGATACACTTTGTTCATACAATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGATAGGATTAACAACTAAGATACACTTTGTTCATACAATTGC  600

seq1  GTTACAAAGCTGGACTCTAAGCACATACAGAGAGAACAGACCCACTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAAGCTGGACTCTAAGCACATACAGAGAGAACAGACCCACTCCAG  650

seq1  CTGTTGGTTTCCTGCAGACTCTCATTCTAGATCCTATGTCTAGATTCGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTTTCCTGCAGACTCTCATTCTAGATCCTATGTCTAGATTCGTA  700

seq1  AGGCATAGGAGCATAATAGTTTGAGGTTTCTGTGATAAATGCAGTCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGGAGCATAATAGTTTGAGGTTTCTGTGATAAATGCAGTCACCC  750

seq1  TAATGAGATAATGAAGAACATGTATGAAATAGATA-TTAATAGCACTGTA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATGAGATAATGAAGAACATGTATGAAATAGATATTTAATAGCACTGTA  800

seq1  GATAGCTTAAATTAGTAATAACAGGCACGGGGCACTTCATTTAGAGAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTAAATTAGTAATAACAGGCACGGGGCACTTCATTTAGAGAAGT  850

seq1  GCTGTAGTGTACTAGATAATAG-CCTGTACTCTGGAGTCACAATGTCTGG  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTGTAGTGTACTAGATAATAGCCCTGTACTCTGGAGTCACAATGTCTGG  900

seq1  A-TTCAGATATCCACTGTGTTATTTACTGCCTTTTTGACCTTAGGTCACT  947
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATATCCACTGTGTTATTTACTGCCTTTTTGACCTTAGGTCACT  950

seq1  TGCTTAGCCTTTCTGTAATTTGGTTTTCCCATTTAGAAAATGGTAGGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCCTTTCTGTAATTTGGTTTTCCCATTTAGAAAATGGTAGGAGG  1000

seq1  AGTAGCACC-TGTCTCATGCTGTTGTCTTG-TGGACTAAAATACAGAGCA  1045
      ||||||||| |||||||||||||||| ||| ||||||||   |  |||||
seq2  AGTAGCACCTTGTCTCATGCTGTTGTTTTGTTGGACTAA---ATCGAGCA  1047

seq1  TAATAACATTAAAAACTAGTTAACATGCCTCACACTTTAGACATGCTTAA  1095
      ||   ||| | ||| ||||| || ||||   |||| |||||||||| || 
seq2  TA--TACA-TGAAACCTAGTAAAAATGCTGTACAC-TTAGACATGC-TAT  1092

seq1  TGCATGTTACCAGTGAGT--AGAGCTTTTGGC-AATAATA--TGCATT  1138
       ||  ||   ||||| ||  |||||||||||| |||||||  ||||||
seq2  GGCTAGTATACAGTGGGTGAAGAGCTTTTGGCAAATAATAAGTGCATT  1140

seq1: chrX_33841409_33842534
seq2: B6Ng01-013J12.g_65_1154 (reverse)

seq1  AAACTGTTACCCAAAACCTAAGATCCATTTTGAGCACATTTATTATTTGC  50
      |||||||||||   ||||||  || |||||  |||||| ||||   | ||
seq2  AAACTGTTACC---AACCTA--ATTCATTT--AGCACA-TTAT--ATGGC  40

seq1  TCAGAATAGTTCAGAAACCATTGCTGATTATGATATATTTGCTCAGACTA  100
      || |||||| |||| ||||| |||||| ||||||||||    ||||||||
seq2  TC-GAATAG-TCAG-AACCA-TGCTGA-TATGATATAT---GTCAGACTA  82

seq1  C-AGCAGATAACTTAAAAAACATGTCGTTCAAGAAGCGGTACATTGTTTC  149
      | ||||||| |||   ||||||||||| |||| |||| ||||| ||||  
seq2  CAAGCAGAT-ACT---AAAACATGTCG-TCAA-AAGC-GTACA-TGTT--  122

seq1  CTTGTTGT-ATAACTTGTTGGACTTTCCACATTGGAATGCTGTTTTC-AG  197
      | |||||| ||||| |||  ||||||||||||  ||||||||||||| ||
seq2  CCTGTTGTAATAAC-TGT--GACTTTCCACAT--GAATGCTGTTTTCAAG  167

seq1  ACTTTAGAGTTTACAGTAAACTTCTCTAATTTTTTAATGGTAAAACAATA  247
      || |||||| ||||||||||| |||||||  ||||||||||||||| |||
seq2  AC-TTAGAG-TTACAGTAAAC-TCTCTAA--TTTTAATGGTAAAACCATA  212

seq1  CTGCATTGAGATATGTTTGTAAAAATGTCAAGCAAATCTTGAATACTGTC  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCATTGAGATATG-TTGTAAAAATGTCAAGCAAATCTTGAATACTGTC  261

seq1  AATCTTTTGCCCCATGGAAAATATAGCTATAAATATAAAATTTCCCAGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTGCCCCATGGAAAATATAGCTATAAATATAAAATTTCCCAGCC  311

seq1  TTGTGGCATAATGATATAGCACATCTAACTCCAGTTATCACTGCCTGAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCATAATGATATAGCACATCTAACTCCAGTTATCACTGCCTGAAC  361

seq1  AATCACTAAATGAAATGAAAATGCCACCTGGTTTCTAAGGTACTTGGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTAAATGAAATGAAAATGCCACCTGGTTTCTAAGGTACTTGGTCA  411

seq1  GCTGCAGCTAAAAGTGTGCAGCAATTCAGGGAGAGACAGGCAAGTCTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCTAAAAGTGTGCAGCAATTCAGGGAGAGACAGGCAAGTCTTTA  461

seq1  GTCCAGAAGGTATTATCAACTAAAATATGTCAGTCTTCACATGTAATATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAAGGTATTATCAACTAAAATATGTCAGTCTTCACATGTAATATA  511

seq1  ACTCAGAAATTGCTAATGTAGTGTTTCTGCAGAGACATTTTAGACTGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATTGCTAATGTAGTGTTTCTGCAGAGACATTTTAGACTGCTT  561

seq1  TAGAAGGATAGGCAAACTCTTCCCTTTTATTAGCAATATCTTTACTAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGATAGGCAAACTCTTCCCTTTTATTAGCAATATCTTTACTAAGT  611

seq1  AAAATCGGGTCTTTAATCCCATTATCCAATGCCTCCCTTAATTCATTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGGGTCTTTAATCCCATTATCCAATGCCTCCCTTAATTCATTTTT  661

seq1  ATACACACAGTAATTACATCATAAAAGGTCTGCAGATCACCCTGTTCAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACAGTAATTACATCATAAAAGGTCTGCAGATCACCCTGTTCAAA  711

seq1  TGTAACAGCTTTGTTCTGTGATGTTCCTGGTGCTAAGGAACTTTCTCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGCTTTGTTCTGTGATGTTCCTGGTGCTAAGGAACTTTCTCTAA  761

seq1  CAATTCTCATATTGATAGATTTCATTTTCGAAGTACATTTCGAAAAAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCATATTGATAGATTTCATTTTCGAAGTACATTTCGAAAAAGAA  811

seq1  CAGTGGGTAAGTTTTAAAAGAAAATTAGCTCAGGATCCTCAAGCTAGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTAAGTTTTAAAAGAAAATTAGCTCAGGATCCTCAAGCTAGTGT  861

seq1  TTCCTCCATGGACAATCACTGCAGCTCATGCTGTAACTAATCTGTGATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATGGACAATCACTGCAGCTCATGCTGTAACTAATCTGTGATGT  911

seq1  GAAGTAGCACACAGAAATCTAGATTGGGAGAAAAAAAGAACTTCTACTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCACACAGAAATCTAGATTGGGAGAAAAAAAGAACTTCTACTAA  961

seq1  TGGTAATTCTGAGGTGCTGCAATAAAACCTAAACTTTACATCGTGCCAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTCTGAGGTGCTGCAATAAAACCTAAACTTTACATCGTGCCAGA  1011

seq1  ACTGCTATGACTCCAATTCATCTTCAGCTGGTCCCAGATTCTAAAAATTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATGACTCCAATTCATCTTCAGCTGGTCCCAGATTCTAAAAATTG  1061

seq1  TCAAGGTCAAAGAACCAGTGACAGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  TCAAGGTCAAAGAACCAGTGACAGAATTC  1090